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IFFO1 (intermediate filament family orphan 1)

Identity

Alias_namesIFFO
intermediate filament family orphan
Alias_symbol (synonym)HOM-TES-103
Other alias
HGNC (Hugo) IFFO1
LocusID (NCBI) 25900
Atlas_Id 40843
Location 12p13.31  [Link to chromosome band 12p13]
Location_base_pair Starts at 6539528 and ends at 6556083 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)IFFO1   24970
Cards
Entrez_Gene (NCBI)IFFO1  25900  intermediate filament family orphan 1
AliasesHOM-TES-103; IFFO
GeneCards (Weizmann)IFFO1
Ensembl hg19 (Hinxton)ENSG00000010295 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000010295 [Gene_View]  chr12:6539528-6556083 [Contig_View]  IFFO1 [Vega]
ICGC DataPortalENSG00000010295
TCGA cBioPortalIFFO1
AceView (NCBI)IFFO1
Genatlas (Paris)IFFO1
WikiGenes25900
SOURCE (Princeton)IFFO1
Genetics Home Reference (NIH)IFFO1
Genomic and cartography
GoldenPath hg38 (UCSC)IFFO1  -     chr12:6539528-6556083 -  12p13.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)IFFO1  -     12p13.31   [Description]    (hg19-Feb_2009)
EnsemblIFFO1 - 12p13.31 [CytoView hg19]  IFFO1 - 12p13.31 [CytoView hg38]
Mapping of homologs : NCBIIFFO1 [Mapview hg19]  IFFO1 [Mapview hg38]
OMIM610495   
Gene and transcription
Genbank (Entrez)###############################################################################################################################################################################################################################################################
RefSeq transcript (Entrez)NM_001039670 NM_001193457 NM_001193459 NM_001330324 NM_001330325 NM_015438 NM_080730 NM_080731
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)IFFO1
Cluster EST : UnigeneHs.15243 [ NCBI ]
CGAP (NCI)Hs.15243
Alternative Splicing GalleryENSG00000010295
Gene ExpressionIFFO1 [ NCBI-GEO ]   IFFO1 [ EBI - ARRAY_EXPRESS ]   IFFO1 [ SEEK ]   IFFO1 [ MEM ]
Gene Expression Viewer (FireBrowse)IFFO1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)25900
GTEX Portal (Tissue expression)IFFO1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ0D2I5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ0D2I5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ0D2I5
Splice isoforms : SwissVarQ0D2I5
PhosPhoSitePlusQ0D2I5
Domains : Interpro (EBI)IF   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)Filament (SM01391)  
Conserved Domain (NCBI)IFFO1
DMDM Disease mutations25900
Blocks (Seattle)IFFO1
SuperfamilyQ0D2I5
Human Protein AtlasENSG00000010295
Peptide AtlasQ0D2I5
HPRD09988
IPIIPI00884887   IPI00787448   IPI00944478   IPI00022868   IPI00944656   IPI00440838   IPI00252929   IPI00449478   IPI00793204   IPI00977955   
Protein Interaction databases
DIP (DOE-UCLA)Q0D2I5
IntAct (EBI)Q0D2I5
FunCoupENSG00000010295
BioGRIDIFFO1
STRING (EMBL)IFFO1
ZODIACIFFO1
Ontologies - Pathways
QuickGOQ0D2I5
Ontology : AmiGOstructural molecule activity  intermediate filament  
Ontology : EGO-EBIstructural molecule activity  intermediate filament  
NDEx NetworkIFFO1
Atlas of Cancer Signalling NetworkIFFO1
Wikipedia pathwaysIFFO1
Orthology - Evolution
OrthoDB25900
GeneTree (enSembl)ENSG00000010295
Phylogenetic Trees/Animal Genes : TreeFamIFFO1
HOVERGENQ0D2I5
HOGENOMQ0D2I5
Homologs : HomoloGeneIFFO1
Homology/Alignments : Family Browser (UCSC)IFFO1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIFFO1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IFFO1
dbVarIFFO1
ClinVarIFFO1
1000_GenomesIFFO1 
Exome Variant ServerIFFO1
ExAC (Exome Aggregation Consortium)IFFO1 (select the gene name)
Genetic variants : HAPMAP25900
Genomic Variants (DGV)IFFO1 [DGVbeta]
DECIPHERIFFO1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisIFFO1 
Mutations
ICGC Data PortalIFFO1 
TCGA Data PortalIFFO1 
Broad Tumor PortalIFFO1
OASIS PortalIFFO1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICIFFO1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDIFFO1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch IFFO1
DgiDB (Drug Gene Interaction Database)IFFO1
DoCM (Curated mutations)IFFO1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IFFO1 (select a term)
intoGenIFFO1
Cancer3DIFFO1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610495   
Orphanet
MedgenIFFO1
Genetic Testing Registry IFFO1
NextProtQ0D2I5 [Medical]
TSGene25900
GENETestsIFFO1
Target ValidationIFFO1
Huge Navigator IFFO1 [HugePedia]
snp3D : Map Gene to Disease25900
BioCentury BCIQIFFO1
ClinGenIFFO1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD25900
Chemical/Pharm GKB GenePA164720809
Clinical trialIFFO1
Miscellaneous
canSAR (ICR)IFFO1 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineIFFO1
EVEXIFFO1
GoPubMedIFFO1
iHOPIFFO1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:55:59 CEST 2017

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