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IFFO2 (intermediate filament family orphan 2)

Identity

Other alias-
HGNC (Hugo) IFFO2
LocusID (NCBI) 126917
Atlas_Id 64503
Location 1p36.13  [Link to chromosome band 1p36]
Location_base_pair Starts at 18904280 and ends at 18956332 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
AP3M1 (10q22.2) / IFFO2 (1p36.13)APOL1 (22q12.3) / IFFO2 (1p36.13)IFFO2 (1p36.13) / AP3M1 (10q22.2)
IFFO2 (1p36.13) / HP1BP3 (1p36.12)IFFO2 (1p36.13) / UBR4 (1p36.13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)IFFO2   27006
Cards
Entrez_Gene (NCBI)IFFO2  126917  intermediate filament family orphan 2
Aliases
GeneCards (Weizmann)IFFO2
Ensembl hg19 (Hinxton)ENSG00000169991 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000169991 [Gene_View]  chr1:18904280-18956332 [Contig_View]  IFFO2 [Vega]
ICGC DataPortalENSG00000169991
TCGA cBioPortalIFFO2
AceView (NCBI)IFFO2
Genatlas (Paris)IFFO2
WikiGenes126917
SOURCE (Princeton)IFFO2
Genetics Home Reference (NIH)IFFO2
Genomic and cartography
GoldenPath hg38 (UCSC)IFFO2  -     chr1:18904280-18956332 -  1p36.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)IFFO2  -     1p36.13   [Description]    (hg19-Feb_2009)
EnsemblIFFO2 - 1p36.13 [CytoView hg19]  IFFO2 - 1p36.13 [CytoView hg38]
Mapping of homologs : NCBIIFFO2 [Mapview hg19]  IFFO2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK024480 BC063709
RefSeq transcript (Entrez)NM_001136265
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)IFFO2
Cluster EST : UnigeneHs.466625 [ NCBI ]
CGAP (NCI)Hs.466625
Alternative Splicing GalleryENSG00000169991
Gene ExpressionIFFO2 [ NCBI-GEO ]   IFFO2 [ EBI - ARRAY_EXPRESS ]   IFFO2 [ SEEK ]   IFFO2 [ MEM ]
Gene Expression Viewer (FireBrowse)IFFO2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)126917
GTEX Portal (Tissue expression)IFFO2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5TF58   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5TF58  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5TF58
Splice isoforms : SwissVarQ5TF58
PhosPhoSitePlusQ5TF58
Domains : Interpro (EBI)IF   
Domain families : Pfam (Sanger)Filament (PF00038)   
Domain families : Pfam (NCBI)pfam00038   
Domain families : Smart (EMBL)Filament (SM01391)  
Conserved Domain (NCBI)IFFO2
DMDM Disease mutations126917
Blocks (Seattle)IFFO2
SuperfamilyQ5TF58
Human Protein AtlasENSG00000169991
Peptide AtlasQ5TF58
IPIIPI00515124   IPI00402102   IPI00974043   
Protein Interaction databases
DIP (DOE-UCLA)Q5TF58
IntAct (EBI)Q5TF58
FunCoupENSG00000169991
BioGRIDIFFO2
STRING (EMBL)IFFO2
ZODIACIFFO2
Ontologies - Pathways
QuickGOQ5TF58
Ontology : AmiGOstructural molecule activity  intermediate filament  
Ontology : EGO-EBIstructural molecule activity  intermediate filament  
NDEx NetworkIFFO2
Atlas of Cancer Signalling NetworkIFFO2
Wikipedia pathwaysIFFO2
Orthology - Evolution
OrthoDB126917
GeneTree (enSembl)ENSG00000169991
Phylogenetic Trees/Animal Genes : TreeFamIFFO2
HOVERGENQ5TF58
HOGENOMQ5TF58
Homologs : HomoloGeneIFFO2
Homology/Alignments : Family Browser (UCSC)IFFO2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIFFO2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IFFO2
dbVarIFFO2
ClinVarIFFO2
1000_GenomesIFFO2 
Exome Variant ServerIFFO2
ExAC (Exome Aggregation Consortium)IFFO2 (select the gene name)
Genetic variants : HAPMAP126917
Genomic Variants (DGV)IFFO2 [DGVbeta]
DECIPHERIFFO2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisIFFO2 
Mutations
ICGC Data PortalIFFO2 
TCGA Data PortalIFFO2 
Broad Tumor PortalIFFO2
OASIS PortalIFFO2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICIFFO2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDIFFO2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch IFFO2
DgiDB (Drug Gene Interaction Database)IFFO2
DoCM (Curated mutations)IFFO2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IFFO2 (select a term)
intoGenIFFO2
Cancer3DIFFO2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenIFFO2
Genetic Testing Registry IFFO2
NextProtQ5TF58 [Medical]
TSGene126917
GENETestsIFFO2
Target ValidationIFFO2
Huge Navigator IFFO2 [HugePedia]
snp3D : Map Gene to Disease126917
BioCentury BCIQIFFO2
ClinGenIFFO2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD126917
Chemical/Pharm GKB GenePA164720824
Clinical trialIFFO2
Miscellaneous
canSAR (ICR)IFFO2 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineIFFO2
EVEXIFFO2
GoPubMedIFFO2
iHOPIFFO2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:10:58 CEST 2017

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