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IFI27L1 (interferon alpha inducible protein 27 like 1)

Identity

Alias_namesFAM14B
family with sequence similarity 14, member B
Other aliasISG12C
HGNC (Hugo) IFI27L1
LocusID (NCBI) 122509
Atlas_Id 64504
Location 14q32.12  [Link to chromosome band 14q32]
Location_base_pair Starts at 94081293 and ends at 94102714 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)IFI27L1   19754
Cards
Entrez_Gene (NCBI)IFI27L1  122509  interferon alpha inducible protein 27 like 1
AliasesFAM14B; ISG12C
GeneCards (Weizmann)IFI27L1
Ensembl hg19 (Hinxton)ENSG00000165948 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000165948 [Gene_View]  chr14:94081293-94102714 [Contig_View]  IFI27L1 [Vega]
ICGC DataPortalENSG00000165948
TCGA cBioPortalIFI27L1
AceView (NCBI)IFI27L1
Genatlas (Paris)IFI27L1
WikiGenes122509
SOURCE (Princeton)IFI27L1
Genetics Home Reference (NIH)IFI27L1
Genomic and cartography
GoldenPath hg38 (UCSC)IFI27L1  -     chr14:94081293-94102714 +  14q32.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)IFI27L1  -     14q32.12   [Description]    (hg19-Feb_2009)
EnsemblIFI27L1 - 14q32.12 [CytoView hg19]  IFI27L1 - 14q32.12 [CytoView hg38]
Mapping of homologs : NCBIIFI27L1 [Mapview hg19]  IFI27L1 [Mapview hg38]
OMIM611320   
Gene and transcription
Genbank (Entrez)BC015423 BN000225 BU739372 DA693965 GQ129390
RefSeq transcript (Entrez)NM_145249 NM_206949
RefSeq genomic (Entrez)NC_000014 NC_018925 NT_187601
Consensus coding sequences : CCDS (NCBI)IFI27L1
Cluster EST : UnigeneHs.19414 [ NCBI ]
CGAP (NCI)Hs.19414
Alternative Splicing GalleryENSG00000165948
Gene ExpressionIFI27L1 [ NCBI-GEO ]   IFI27L1 [ EBI - ARRAY_EXPRESS ]   IFI27L1 [ SEEK ]   IFI27L1 [ MEM ]
Gene Expression Viewer (FireBrowse)IFI27L1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)122509
GTEX Portal (Tissue expression)IFI27L1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96BM0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96BM0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96BM0
Splice isoforms : SwissVarQ96BM0
PhosPhoSitePlusQ96BM0
Domains : Interpro (EBI)IFI6/IFI27   
Domain families : Pfam (Sanger)Ifi-6-16 (PF06140)   
Domain families : Pfam (NCBI)pfam06140   
Conserved Domain (NCBI)IFI27L1
DMDM Disease mutations122509
Blocks (Seattle)IFI27L1
PDB (SRS)2LOQ   
PDB (PDBSum)2LOQ   
PDB (IMB)2LOQ   
PDB (RSDB)2LOQ   
Structural Biology KnowledgeBase2LOQ   
SCOP (Structural Classification of Proteins)2LOQ   
CATH (Classification of proteins structures)2LOQ   
SuperfamilyQ96BM0
Human Protein AtlasENSG00000165948
Peptide AtlasQ96BM0
HPRD13292
IPIIPI00060020   IPI01026486   IPI01024728   IPI01025341   IPI01025475   IPI01025123   IPI01025244   IPI01025514   
Protein Interaction databases
DIP (DOE-UCLA)Q96BM0
IntAct (EBI)Q96BM0
FunCoupENSG00000165948
BioGRIDIFI27L1
STRING (EMBL)IFI27L1
ZODIACIFI27L1
Ontologies - Pathways
QuickGOQ96BM0
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkIFI27L1
Atlas of Cancer Signalling NetworkIFI27L1
Wikipedia pathwaysIFI27L1
Orthology - Evolution
OrthoDB122509
GeneTree (enSembl)ENSG00000165948
Phylogenetic Trees/Animal Genes : TreeFamIFI27L1
HOVERGENQ96BM0
HOGENOMQ96BM0
Homologs : HomoloGeneIFI27L1
Homology/Alignments : Family Browser (UCSC)IFI27L1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIFI27L1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IFI27L1
dbVarIFI27L1
ClinVarIFI27L1
1000_GenomesIFI27L1 
Exome Variant ServerIFI27L1
ExAC (Exome Aggregation Consortium)IFI27L1 (select the gene name)
Genetic variants : HAPMAP122509
Genomic Variants (DGV)IFI27L1 [DGVbeta]
DECIPHERIFI27L1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisIFI27L1 
Mutations
ICGC Data PortalIFI27L1 
TCGA Data PortalIFI27L1 
Broad Tumor PortalIFI27L1
OASIS PortalIFI27L1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICIFI27L1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDIFI27L1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch IFI27L1
DgiDB (Drug Gene Interaction Database)IFI27L1
DoCM (Curated mutations)IFI27L1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IFI27L1 (select a term)
intoGenIFI27L1
Cancer3DIFI27L1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611320   
Orphanet
MedgenIFI27L1
Genetic Testing Registry IFI27L1
NextProtQ96BM0 [Medical]
TSGene122509
GENETestsIFI27L1
Target ValidationIFI27L1
Huge Navigator IFI27L1 [HugePedia]
snp3D : Map Gene to Disease122509
BioCentury BCIQIFI27L1
ClinGenIFI27L1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD122509
Chemical/Pharm GKB GenePA164720846
Clinical trialIFI27L1
Miscellaneous
canSAR (ICR)IFI27L1 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineIFI27L1
EVEXIFI27L1
GoPubMedIFI27L1
iHOPIFI27L1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:10:58 CEST 2017

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