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IFI27L2 (interferon alpha inducible protein 27 like 2)

Identity

Alias_namesFAM14A
family with sequence similarity 14, member A
Alias_symbol (synonym)TLH29
Other aliasISG12B
HGNC (Hugo) IFI27L2
LocusID (NCBI) 83982
Atlas_Id 64505
Location 14q32.12  [Link to chromosome band 14q32]
Location_base_pair Starts at 94127781 and ends at 94129620 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
IFI27L2 (14q32.12) / SEPT9 (17q25.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)IFI27L2   19753
Cards
Entrez_Gene (NCBI)IFI27L2  83982  interferon alpha inducible protein 27 like 2
AliasesFAM14A; ISG12B; TLH29
GeneCards (Weizmann)IFI27L2
Ensembl hg19 (Hinxton)ENSG00000119632 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000119632 [Gene_View]  chr14:94127781-94129620 [Contig_View]  IFI27L2 [Vega]
ICGC DataPortalENSG00000119632
TCGA cBioPortalIFI27L2
AceView (NCBI)IFI27L2
Genatlas (Paris)IFI27L2
WikiGenes83982
SOURCE (Princeton)IFI27L2
Genetics Home Reference (NIH)IFI27L2
Genomic and cartography
GoldenPath hg38 (UCSC)IFI27L2  -     chr14:94127781-94129620 -  14q32.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)IFI27L2  -     14q32.12   [Description]    (hg19-Feb_2009)
EnsemblIFI27L2 - 14q32.12 [CytoView hg19]  IFI27L2 - 14q32.12 [CytoView hg38]
Mapping of homologs : NCBIIFI27L2 [Mapview hg19]  IFI27L2 [Mapview hg38]
OMIM611319   
Gene and transcription
Genbank (Entrez)AF208232 AF238978 BC022800 BC032626 BE737110
RefSeq transcript (Entrez)NM_032036
RefSeq genomic (Entrez)NC_000014 NC_018925 NT_187601
Consensus coding sequences : CCDS (NCBI)IFI27L2
Cluster EST : UnigeneHs.94695 [ NCBI ]
CGAP (NCI)Hs.94695
Alternative Splicing GalleryENSG00000119632
Gene ExpressionIFI27L2 [ NCBI-GEO ]   IFI27L2 [ EBI - ARRAY_EXPRESS ]   IFI27L2 [ SEEK ]   IFI27L2 [ MEM ]
Gene Expression Viewer (FireBrowse)IFI27L2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83982
GTEX Portal (Tissue expression)IFI27L2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H2X8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H2X8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H2X8
Splice isoforms : SwissVarQ9H2X8
PhosPhoSitePlusQ9H2X8
Domains : Interpro (EBI)IFI6/IFI27   
Domain families : Pfam (Sanger)Ifi-6-16 (PF06140)   
Domain families : Pfam (NCBI)pfam06140   
Conserved Domain (NCBI)IFI27L2
DMDM Disease mutations83982
Blocks (Seattle)IFI27L2
SuperfamilyQ9H2X8
Human Protein AtlasENSG00000119632
Peptide AtlasQ9H2X8
HPRD13291
IPIIPI00012483   IPI01024938   
Protein Interaction databases
DIP (DOE-UCLA)Q9H2X8
IntAct (EBI)Q9H2X8
FunCoupENSG00000119632
BioGRIDIFI27L2
STRING (EMBL)IFI27L2
ZODIACIFI27L2
Ontologies - Pathways
QuickGOQ9H2X8
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkIFI27L2
Atlas of Cancer Signalling NetworkIFI27L2
Wikipedia pathwaysIFI27L2
Orthology - Evolution
OrthoDB83982
GeneTree (enSembl)ENSG00000119632
Phylogenetic Trees/Animal Genes : TreeFamIFI27L2
HOVERGENQ9H2X8
HOGENOMQ9H2X8
Homologs : HomoloGeneIFI27L2
Homology/Alignments : Family Browser (UCSC)IFI27L2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIFI27L2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IFI27L2
dbVarIFI27L2
ClinVarIFI27L2
1000_GenomesIFI27L2 
Exome Variant ServerIFI27L2
ExAC (Exome Aggregation Consortium)IFI27L2 (select the gene name)
Genetic variants : HAPMAP83982
Genomic Variants (DGV)IFI27L2 [DGVbeta]
DECIPHERIFI27L2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisIFI27L2 
Mutations
ICGC Data PortalIFI27L2 
TCGA Data PortalIFI27L2 
Broad Tumor PortalIFI27L2
OASIS PortalIFI27L2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICIFI27L2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDIFI27L2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch IFI27L2
DgiDB (Drug Gene Interaction Database)IFI27L2
DoCM (Curated mutations)IFI27L2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IFI27L2 (select a term)
intoGenIFI27L2
Cancer3DIFI27L2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611319   
Orphanet
MedgenIFI27L2
Genetic Testing Registry IFI27L2
NextProtQ9H2X8 [Medical]
TSGene83982
GENETestsIFI27L2
Target ValidationIFI27L2
Huge Navigator IFI27L2 [HugePedia]
snp3D : Map Gene to Disease83982
BioCentury BCIQIFI27L2
ClinGenIFI27L2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD83982
Chemical/Pharm GKB GenePA164720861
Clinical trialIFI27L2
Miscellaneous
canSAR (ICR)IFI27L2 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineIFI27L2
EVEXIFI27L2
GoPubMedIFI27L2
iHOPIFI27L2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 16:17:37 CEST 2017

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