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IFI27L2 (interferon alpha inducible protein 27 like 2)

Identity

Alias (NCBI)FAM14A
ISG12B
TLH29
HGNC (Hugo) IFI27L2
HGNC Alias symbTLH29
HGNC Previous nameFAM14A
HGNC Previous namefamily with sequence similarity 14, member A
LocusID (NCBI) 83982
Atlas_Id 64505
Location 14q32.12  [Link to chromosome band 14q32]
Location_base_pair Starts at 94127781 and ends at 94129604 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
IFI27L2 (14q32.12) / SEPT9 (17q25.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)IFI27L2   19753
Cards
Entrez_Gene (NCBI)IFI27L2    interferon alpha inducible protein 27 like 2
AliasesFAM14A; ISG12B; TLH29
GeneCards (Weizmann)IFI27L2
Ensembl hg19 (Hinxton)ENSG00000119632 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000119632 [Gene_View]  ENSG00000119632 [Sequence]  chr14:94127781-94129604 [Contig_View]  IFI27L2 [Vega]
ICGC DataPortalENSG00000119632
TCGA cBioPortalIFI27L2
AceView (NCBI)IFI27L2
Genatlas (Paris)IFI27L2
SOURCE (Princeton)IFI27L2
Genetics Home Reference (NIH)IFI27L2
Genomic and cartography
GoldenPath hg38 (UCSC)IFI27L2  -     chr14:94127781-94129604 -  14q32.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)IFI27L2  -     14q32.12   [Description]    (hg19-Feb_2009)
GoldenPathIFI27L2 - 14q32.12 [CytoView hg19]  IFI27L2 - 14q32.12 [CytoView hg38]
ImmunoBaseENSG00000119632
Genome Data Viewer NCBIIFI27L2 [Mapview hg19]  
OMIM611319   
Gene and transcription
Genbank (Entrez)AF208232 AF238978 BC022800 BC032626 BE737110
RefSeq transcript (Entrez)NM_032036
Consensus coding sequences : CCDS (NCBI)IFI27L2
Gene ExpressionIFI27L2 [ NCBI-GEO ]   IFI27L2 [ EBI - ARRAY_EXPRESS ]   IFI27L2 [ SEEK ]   IFI27L2 [ MEM ]
Gene Expression Viewer (FireBrowse)IFI27L2 [ Firebrowse - Broad ]
GenevisibleExpression of IFI27L2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83982
GTEX Portal (Tissue expression)IFI27L2
Human Protein AtlasENSG00000119632-IFI27L2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H2X8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H2X8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H2X8
PhosPhoSitePlusQ9H2X8
Domains : Interpro (EBI)IFI6/IFI27-like    IFI6/IFI27-like_sf   
Domain families : Pfam (Sanger)Ifi-6-16 (PF06140)   
Domain families : Pfam (NCBI)pfam06140   
Conserved Domain (NCBI)IFI27L2
SuperfamilyQ9H2X8
AlphaFold pdb e-kbQ9H2X8   
Human Protein Atlas [tissue]ENSG00000119632-IFI27L2 [tissue]
HPRD13291
Protein Interaction databases
DIP (DOE-UCLA)Q9H2X8
IntAct (EBI)Q9H2X8
BioGRIDIFI27L2
STRING (EMBL)IFI27L2
ZODIACIFI27L2
Ontologies - Pathways
QuickGOQ9H2X8
Ontology : AmiGOmitochondrion  apoptotic process  integral component of membrane  mitochondrial membrane  apoptotic signaling pathway  
Ontology : EGO-EBImitochondrion  apoptotic process  integral component of membrane  mitochondrial membrane  apoptotic signaling pathway  
NDEx NetworkIFI27L2
Atlas of Cancer Signalling NetworkIFI27L2
Wikipedia pathwaysIFI27L2
Orthology - Evolution
OrthoDB83982
GeneTree (enSembl)ENSG00000119632
Phylogenetic Trees/Animal Genes : TreeFamIFI27L2
Homologs : HomoloGeneIFI27L2
Homology/Alignments : Family Browser (UCSC)IFI27L2
Gene fusions - Rearrangements
Fusion : QuiverIFI27L2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIFI27L2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IFI27L2
dbVarIFI27L2
ClinVarIFI27L2
MonarchIFI27L2
1000_GenomesIFI27L2 
Exome Variant ServerIFI27L2
GNOMAD BrowserENSG00000119632
Varsome BrowserIFI27L2
ACMGIFI27L2 variants
VarityQ9H2X8
Genomic Variants (DGV)IFI27L2 [DGVbeta]
DECIPHERIFI27L2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisIFI27L2 
Mutations
ICGC Data PortalIFI27L2 
TCGA Data PortalIFI27L2 
Broad Tumor PortalIFI27L2
OASIS PortalIFI27L2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICIFI27L2  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DIFI27L2
Mutations and Diseases : HGMDIFI27L2
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaIFI27L2
DgiDB (Drug Gene Interaction Database)IFI27L2
DoCM (Curated mutations)IFI27L2
CIViC (Clinical Interpretations of Variants in Cancer)IFI27L2
Cancer3DIFI27L2
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611319   
Orphanet
DisGeNETIFI27L2
MedgenIFI27L2
Genetic Testing Registry IFI27L2
NextProtQ9H2X8 [Medical]
GENETestsIFI27L2
Target ValidationIFI27L2
Huge Navigator IFI27L2 [HugePedia]
ClinGenIFI27L2
Clinical trials, drugs, therapy
MyCancerGenomeIFI27L2
Protein Interactions : CTDIFI27L2
Pharm GKB GenePA164720861
PharosQ9H2X8
Clinical trialIFI27L2
Miscellaneous
canSAR (ICR)IFI27L2
HarmonizomeIFI27L2
DataMed IndexIFI27L2
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXIFI27L2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:53:27 CEST 2021

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