Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

IFI35 (interferon induced protein 35)

Identity

Alias_namesinterferon-induced protein 35
Alias_symbol (synonym)IFP35
Other alias
HGNC (Hugo) IFI35
LocusID (NCBI) 3430
Atlas_Id 64506
Location 17q21.31  [Link to chromosome band 17q21]
Location_base_pair Starts at 43006725 and ends at 43014459 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
IFI35 (17q21.31) / PPIP5K2 (5q21.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)IFI35   5399
Cards
Entrez_Gene (NCBI)IFI35  3430  interferon induced protein 35
AliasesIFP35
GeneCards (Weizmann)IFI35
Ensembl hg19 (Hinxton)ENSG00000068079 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000068079 [Gene_View]  chr17:43006725-43014459 [Contig_View]  IFI35 [Vega]
ICGC DataPortalENSG00000068079
TCGA cBioPortalIFI35
AceView (NCBI)IFI35
Genatlas (Paris)IFI35
WikiGenes3430
SOURCE (Princeton)IFI35
Genetics Home Reference (NIH)IFI35
Genomic and cartography
GoldenPath hg38 (UCSC)IFI35  -     chr17:43006725-43014459 +  17q21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)IFI35  -     17q21.31   [Description]    (hg19-Feb_2009)
EnsemblIFI35 - 17q21.31 [CytoView hg19]  IFI35 - 17q21.31 [CytoView hg38]
Mapping of homologs : NCBIIFI35 [Mapview hg19]  IFI35 [Mapview hg38]
OMIM600735   
Gene and transcription
Genbank (Entrez)AA740882 AA827287 AA832092 AK025406 BC001356
RefSeq transcript (Entrez)NM_001330230 NM_005533
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)IFI35
Cluster EST : UnigeneHs.632258 [ NCBI ]
CGAP (NCI)Hs.632258
Alternative Splicing GalleryENSG00000068079
Gene ExpressionIFI35 [ NCBI-GEO ]   IFI35 [ EBI - ARRAY_EXPRESS ]   IFI35 [ SEEK ]   IFI35 [ MEM ]
Gene Expression Viewer (FireBrowse)IFI35 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3430
GTEX Portal (Tissue expression)IFI35
Protein : pattern, domain, 3D structure
UniProt/SwissProtP80217   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP80217  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP80217
Splice isoforms : SwissVarP80217
PhosPhoSitePlusP80217
Domains : Interpro (EBI)Nmi/IFP35_dom    Nmi/IFP35_N   
Domain families : Pfam (Sanger)IFP_35_N (PF07334)    NID (PF07292)   
Domain families : Pfam (NCBI)pfam07334    pfam07292   
Conserved Domain (NCBI)IFI35
DMDM Disease mutations3430
Blocks (Seattle)IFI35
SuperfamilyP80217
Human Protein AtlasENSG00000068079
Peptide AtlasP80217
HPRD02844
IPIIPI00008613   IPI00218475   
Protein Interaction databases
DIP (DOE-UCLA)P80217
IntAct (EBI)P80217
FunCoupENSG00000068079
BioGRIDIFI35
STRING (EMBL)IFI35
ZODIACIFI35
Ontologies - Pathways
QuickGOP80217
Ontology : AmiGOprotein binding  nucleus  cytosol  type I interferon signaling pathway  
Ontology : EGO-EBIprotein binding  nucleus  cytosol  type I interferon signaling pathway  
NDEx NetworkIFI35
Atlas of Cancer Signalling NetworkIFI35
Wikipedia pathwaysIFI35
Orthology - Evolution
OrthoDB3430
GeneTree (enSembl)ENSG00000068079
Phylogenetic Trees/Animal Genes : TreeFamIFI35
HOVERGENP80217
HOGENOMP80217
Homologs : HomoloGeneIFI35
Homology/Alignments : Family Browser (UCSC)IFI35
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIFI35 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IFI35
dbVarIFI35
ClinVarIFI35
1000_GenomesIFI35 
Exome Variant ServerIFI35
ExAC (Exome Aggregation Consortium)IFI35 (select the gene name)
Genetic variants : HAPMAP3430
Genomic Variants (DGV)IFI35 [DGVbeta]
DECIPHERIFI35 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisIFI35 
Mutations
ICGC Data PortalIFI35 
TCGA Data PortalIFI35 
Broad Tumor PortalIFI35
OASIS PortalIFI35 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICIFI35  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDIFI35
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch IFI35
DgiDB (Drug Gene Interaction Database)IFI35
DoCM (Curated mutations)IFI35 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IFI35 (select a term)
intoGenIFI35
Cancer3DIFI35(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM600735   
Orphanet
MedgenIFI35
Genetic Testing Registry IFI35
NextProtP80217 [Medical]
TSGene3430
GENETestsIFI35
Target ValidationIFI35
Huge Navigator IFI35 [HugePedia]
snp3D : Map Gene to Disease3430
BioCentury BCIQIFI35
ClinGenIFI35
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD3430
Chemical/Pharm GKB GenePA29645
Clinical trialIFI35
Miscellaneous
canSAR (ICR)IFI35 (select the gene name)
Probes
Litterature
PubMed25 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineIFI35
EVEXIFI35
GoPubMedIFI35
iHOPIFI35
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:53:08 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.