Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

IFI44 (interferon induced protein 44)

Identity

Alias (NCBI)MTAP44
TLDC5
p44
HGNC (Hugo) IFI44
HGNC Alias symbMTAP44
p44
TLDC5
HGNC Alias nameTBC/LysM-associated domain containing 5
HGNC Previous nameinterferon-induced protein 44
LocusID (NCBI) 10561
Atlas_Id 64507
Location 1p31.1  [Link to chromosome band 1p31]
Location_base_pair Starts at 78649831 and ends at 78664073 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)IFI44   16938
Cards
Entrez_Gene (NCBI)IFI44    interferon induced protein 44
AliasesMTAP44; TLDC5; p44
GeneCards (Weizmann)IFI44
Ensembl hg19 (Hinxton)ENSG00000137965 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000137965 [Gene_View]  ENSG00000137965 [Sequence]  chr1:78649831-78664073 [Contig_View]  IFI44 [Vega]
ICGC DataPortalENSG00000137965
TCGA cBioPortalIFI44
AceView (NCBI)IFI44
Genatlas (Paris)IFI44
SOURCE (Princeton)IFI44
Genetics Home Reference (NIH)IFI44
Genomic and cartography
GoldenPath hg38 (UCSC)IFI44  -     chr1:78649831-78664073 +  1p31.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)IFI44  -     1p31.1   [Description]    (hg19-Feb_2009)
GoldenPathIFI44 - 1p31.1 [CytoView hg19]  IFI44 - 1p31.1 [CytoView hg38]
ImmunoBaseENSG00000137965
Genome Data Viewer NCBIIFI44 [Mapview hg19]  
OMIM610468   
Gene and transcription
Genbank (Entrez)AI061108 AK302527 AK316278 AK316476 AL589497
RefSeq transcript (Entrez)NM_006417
Consensus coding sequences : CCDS (NCBI)IFI44
Gene ExpressionIFI44 [ NCBI-GEO ]   IFI44 [ EBI - ARRAY_EXPRESS ]   IFI44 [ SEEK ]   IFI44 [ MEM ]
Gene Expression Viewer (FireBrowse)IFI44 [ Firebrowse - Broad ]
GenevisibleExpression of IFI44 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10561
GTEX Portal (Tissue expression)IFI44
Human Protein AtlasENSG00000137965-IFI44 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TCB0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TCB0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TCB0
PhosPhoSitePlusQ8TCB0
Domaine pattern : Prosite (Expaxy)TLDC (PS51886)   
Domains : Interpro (EBI)IFI44_fam    P-loop_NTPase    TLDc_dom   
Domain families : Pfam (Sanger)TLD (PF07534)   
Domain families : Pfam (NCBI)pfam07534   
Conserved Domain (NCBI)IFI44
SuperfamilyQ8TCB0
AlphaFold pdb e-kbQ8TCB0   
Human Protein Atlas [tissue]ENSG00000137965-IFI44 [tissue]
HPRD09998
Protein Interaction databases
DIP (DOE-UCLA)Q8TCB0
IntAct (EBI)Q8TCB0
BioGRIDIFI44
STRING (EMBL)IFI44
ZODIACIFI44
Ontologies - Pathways
QuickGOQ8TCB0
Ontology : AmiGOprotein binding  cytoplasm  immune response  response to virus  response to bacterium  
Ontology : EGO-EBIprotein binding  cytoplasm  immune response  response to virus  response to bacterium  
NDEx NetworkIFI44
Atlas of Cancer Signalling NetworkIFI44
Wikipedia pathwaysIFI44
Orthology - Evolution
OrthoDB10561
GeneTree (enSembl)ENSG00000137965
Phylogenetic Trees/Animal Genes : TreeFamIFI44
Homologs : HomoloGeneIFI44
Homology/Alignments : Family Browser (UCSC)IFI44
Gene fusions - Rearrangements
Fusion : QuiverIFI44
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIFI44 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IFI44
dbVarIFI44
ClinVarIFI44
MonarchIFI44
1000_GenomesIFI44 
Exome Variant ServerIFI44
GNOMAD BrowserENSG00000137965
Varsome BrowserIFI44
ACMGIFI44 variants
VarityQ8TCB0
Genomic Variants (DGV)IFI44 [DGVbeta]
DECIPHERIFI44 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisIFI44 
Mutations
ICGC Data PortalIFI44 
TCGA Data PortalIFI44 
Broad Tumor PortalIFI44
OASIS PortalIFI44 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICIFI44  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DIFI44
Mutations and Diseases : HGMDIFI44
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaIFI44
DgiDB (Drug Gene Interaction Database)IFI44
DoCM (Curated mutations)IFI44
CIViC (Clinical Interpretations of Variants in Cancer)IFI44
Cancer3DIFI44
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610468   
Orphanet
DisGeNETIFI44
MedgenIFI44
Genetic Testing Registry IFI44
NextProtQ8TCB0 [Medical]
GENETestsIFI44
Target ValidationIFI44
Huge Navigator IFI44 [HugePedia]
ClinGenIFI44
Clinical trials, drugs, therapy
MyCancerGenomeIFI44
Protein Interactions : CTDIFI44
Pharm GKB GenePA29647
PharosQ8TCB0
Clinical trialIFI44
Miscellaneous
canSAR (ICR)IFI44
HarmonizomeIFI44
DataMed IndexIFI44
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXIFI44
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 15:53:27 CEST 2021

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.