Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

IFI44 (interferon induced protein 44)

Identity

Alias_namesinterferon-induced protein 44
Alias_symbol (synonym)MTAP44
p44
TLDC5
Other alias
HGNC (Hugo) IFI44
LocusID (NCBI) 10561
Atlas_Id 64507
Location 1p31.1  [Link to chromosome band 1p31]
Location_base_pair Starts at 78649792 and ends at 78664078 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)IFI44   16938
Cards
Entrez_Gene (NCBI)IFI44  10561  interferon induced protein 44
AliasesMTAP44; TLDC5; p44
GeneCards (Weizmann)IFI44
Ensembl hg19 (Hinxton)ENSG00000137965 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000137965 [Gene_View]  chr1:78649792-78664078 [Contig_View]  IFI44 [Vega]
ICGC DataPortalENSG00000137965
TCGA cBioPortalIFI44
AceView (NCBI)IFI44
Genatlas (Paris)IFI44
WikiGenes10561
SOURCE (Princeton)IFI44
Genetics Home Reference (NIH)IFI44
Genomic and cartography
GoldenPath hg38 (UCSC)IFI44  -     chr1:78649792-78664078 +  1p31.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)IFI44  -     1p31.1   [Description]    (hg19-Feb_2009)
EnsemblIFI44 - 1p31.1 [CytoView hg19]  IFI44 - 1p31.1 [CytoView hg38]
Mapping of homologs : NCBIIFI44 [Mapview hg19]  IFI44 [Mapview hg38]
OMIM610468   
Gene and transcription
Genbank (Entrez)AI061108 AK302527 AK316278 AK316476 AL589497
RefSeq transcript (Entrez)NM_006417
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)IFI44
Cluster EST : UnigeneHs.82316 [ NCBI ]
CGAP (NCI)Hs.82316
Alternative Splicing GalleryENSG00000137965
Gene ExpressionIFI44 [ NCBI-GEO ]   IFI44 [ EBI - ARRAY_EXPRESS ]   IFI44 [ SEEK ]   IFI44 [ MEM ]
Gene Expression Viewer (FireBrowse)IFI44 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10561
GTEX Portal (Tissue expression)IFI44
Human Protein AtlasENSG00000137965-IFI44 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TCB0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TCB0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TCB0
Splice isoforms : SwissVarQ8TCB0
PhosPhoSitePlusQ8TCB0
Domains : Interpro (EBI)IFI44_fam    P-loop_NTPase    TLDc_dom   
Domain families : Pfam (Sanger)TLD (PF07534)   
Domain families : Pfam (NCBI)pfam07534   
Conserved Domain (NCBI)IFI44
DMDM Disease mutations10561
Blocks (Seattle)IFI44
SuperfamilyQ8TCB0
Human Protein Atlas [tissue]ENSG00000137965-IFI44 [tissue]
Peptide AtlasQ8TCB0
HPRD09998
IPIIPI00291278   IPI01011433   IPI00647495   IPI00639873   
Protein Interaction databases
DIP (DOE-UCLA)Q8TCB0
IntAct (EBI)Q8TCB0
FunCoupENSG00000137965
BioGRIDIFI44
STRING (EMBL)IFI44
ZODIACIFI44
Ontologies - Pathways
QuickGOQ8TCB0
Ontology : AmiGOcytoplasm  response to virus  
Ontology : EGO-EBIcytoplasm  response to virus  
NDEx NetworkIFI44
Atlas of Cancer Signalling NetworkIFI44
Wikipedia pathwaysIFI44
Orthology - Evolution
OrthoDB10561
GeneTree (enSembl)ENSG00000137965
Phylogenetic Trees/Animal Genes : TreeFamIFI44
HOVERGENQ8TCB0
HOGENOMQ8TCB0
Homologs : HomoloGeneIFI44
Homology/Alignments : Family Browser (UCSC)IFI44
Gene fusions - Rearrangements
Tumor Fusion PortalIFI44
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIFI44 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IFI44
dbVarIFI44
ClinVarIFI44
1000_GenomesIFI44 
Exome Variant ServerIFI44
ExAC (Exome Aggregation Consortium)ENSG00000137965
GNOMAD BrowserENSG00000137965
Genetic variants : HAPMAP10561
Genomic Variants (DGV)IFI44 [DGVbeta]
DECIPHERIFI44 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisIFI44 
Mutations
ICGC Data PortalIFI44 
TCGA Data PortalIFI44 
Broad Tumor PortalIFI44
OASIS PortalIFI44 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICIFI44  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDIFI44
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch IFI44
DgiDB (Drug Gene Interaction Database)IFI44
DoCM (Curated mutations)IFI44 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IFI44 (select a term)
intoGenIFI44
Cancer3DIFI44(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610468   
Orphanet
DisGeNETIFI44
MedgenIFI44
Genetic Testing Registry IFI44
NextProtQ8TCB0 [Medical]
TSGene10561
GENETestsIFI44
Target ValidationIFI44
Huge Navigator IFI44 [HugePedia]
snp3D : Map Gene to Disease10561
BioCentury BCIQIFI44
ClinGenIFI44
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10561
Chemical/Pharm GKB GenePA29647
Clinical trialIFI44
Miscellaneous
canSAR (ICR)IFI44 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineIFI44
EVEXIFI44
GoPubMedIFI44
iHOPIFI44
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Nov 20 19:33:41 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.