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IFI44L (interferon induced protein 44 like)

Identity

Alias_namesC1orf29
chromosome 1 open reading frame 29
interferon-induced protein 44-like
Alias_symbol (synonym)GS3686
Other alias
HGNC (Hugo) IFI44L
LocusID (NCBI) 10964
Atlas_Id 64508
Location 1p31.1  [Link to chromosome band 1p31]
Location_base_pair Starts at 78620382 and ends at 78646145 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CSMD2 (1p35.1) / IFI44L (1p31.1)IFI44L (1p31.1) / IFI44L (1p31.1)IFI44L (1p31.1) / SLC44A3 (1p21.3)
RPL29 (3p21.2) / IFI44L (1p31.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)IFI44L   17817
Cards
Entrez_Gene (NCBI)IFI44L  10964  interferon induced protein 44 like
AliasesC1orf29; GS3686
GeneCards (Weizmann)IFI44L
Ensembl hg19 (Hinxton)ENSG00000137959 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000137959 [Gene_View]  chr1:78620382-78646145 [Contig_View]  IFI44L [Vega]
ICGC DataPortalENSG00000137959
TCGA cBioPortalIFI44L
AceView (NCBI)IFI44L
Genatlas (Paris)IFI44L
WikiGenes10964
SOURCE (Princeton)IFI44L
Genetics Home Reference (NIH)IFI44L
Genomic and cartography
GoldenPath hg38 (UCSC)IFI44L  -     chr1:78620382-78646145 +  1p31.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)IFI44L  -     1p31.1   [Description]    (hg19-Feb_2009)
EnsemblIFI44L - 1p31.1 [CytoView hg19]  IFI44L - 1p31.1 [CytoView hg38]
Mapping of homologs : NCBIIFI44L [Mapview hg19]  IFI44L [Mapview hg38]
OMIM613975   
Gene and transcription
Genbank (Entrez)AB000115 AB116553 AK223087 AK225442 AK293385
RefSeq transcript (Entrez)NM_006820
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)IFI44L
Cluster EST : UnigeneHs.744918 [ NCBI ]
CGAP (NCI)Hs.744918
Alternative Splicing GalleryENSG00000137959
Gene ExpressionIFI44L [ NCBI-GEO ]   IFI44L [ EBI - ARRAY_EXPRESS ]   IFI44L [ SEEK ]   IFI44L [ MEM ]
Gene Expression Viewer (FireBrowse)IFI44L [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10964
GTEX Portal (Tissue expression)IFI44L
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ53G44   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ53G44  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ53G44
Splice isoforms : SwissVarQ53G44
PhosPhoSitePlusQ53G44
Domains : Interpro (EBI)GTP_binding_domain    IFI44_fam    P-loop_NTPase   
Domain families : Pfam (Sanger)MMR_HSR1 (PF01926)   
Domain families : Pfam (NCBI)pfam01926   
Conserved Domain (NCBI)IFI44L
DMDM Disease mutations10964
Blocks (Seattle)IFI44L
SuperfamilyQ53G44
Human Protein AtlasENSG00000137959
Peptide AtlasQ53G44
HPRD13728
IPIIPI00303276   IPI00894388   IPI00937810   IPI00952991   IPI00892807   
Protein Interaction databases
DIP (DOE-UCLA)Q53G44
IntAct (EBI)Q53G44
FunCoupENSG00000137959
BioGRIDIFI44L
STRING (EMBL)IFI44L
ZODIACIFI44L
Ontologies - Pathways
QuickGOQ53G44
Ontology : AmiGOGTP binding  cytoplasm  defense response to virus  
Ontology : EGO-EBIGTP binding  cytoplasm  defense response to virus  
NDEx NetworkIFI44L
Atlas of Cancer Signalling NetworkIFI44L
Wikipedia pathwaysIFI44L
Orthology - Evolution
OrthoDB10964
GeneTree (enSembl)ENSG00000137959
Phylogenetic Trees/Animal Genes : TreeFamIFI44L
HOVERGENQ53G44
HOGENOMQ53G44
Homologs : HomoloGeneIFI44L
Homology/Alignments : Family Browser (UCSC)IFI44L
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIFI44L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IFI44L
dbVarIFI44L
ClinVarIFI44L
1000_GenomesIFI44L 
Exome Variant ServerIFI44L
ExAC (Exome Aggregation Consortium)IFI44L (select the gene name)
Genetic variants : HAPMAP10964
Genomic Variants (DGV)IFI44L [DGVbeta]
DECIPHERIFI44L [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisIFI44L 
Mutations
ICGC Data PortalIFI44L 
TCGA Data PortalIFI44L 
Broad Tumor PortalIFI44L
OASIS PortalIFI44L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICIFI44L  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDIFI44L
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch IFI44L
DgiDB (Drug Gene Interaction Database)IFI44L
DoCM (Curated mutations)IFI44L (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IFI44L (select a term)
intoGenIFI44L
Cancer3DIFI44L(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613975   
Orphanet
MedgenIFI44L
Genetic Testing Registry IFI44L
NextProtQ53G44 [Medical]
TSGene10964
GENETestsIFI44L
Target ValidationIFI44L
Huge Navigator IFI44L [HugePedia]
snp3D : Map Gene to Disease10964
BioCentury BCIQIFI44L
ClinGenIFI44L
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10964
Chemical/Pharm GKB GenePA25615
Clinical trialIFI44L
Miscellaneous
canSAR (ICR)IFI44L (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineIFI44L
EVEXIFI44L
GoPubMedIFI44L
iHOPIFI44L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:10:59 CEST 2017

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