Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

IFIT1B (interferon induced protein with tetratricopeptide repeats 1B)

Identity

Alias_namesIFIT1L
interferon-induced protein with tetratricopeptide repeats 1-like
interferon-induced protein with tetratricopeptide repeats 1B
Alias_symbol (synonym)bA149I23.6
Other alias
HGNC (Hugo) IFIT1B
LocusID (NCBI) 439996
Atlas_Id 64509
Location 10q23.31  [Link to chromosome band 10q23]
Location_base_pair Starts at 89378056 and ends at 89385205 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)IFIT1B   23442
Cards
Entrez_Gene (NCBI)IFIT1B  439996  interferon induced protein with tetratricopeptide repeats 1B
AliasesIFIT1L; bA149I23.6
GeneCards (Weizmann)IFIT1B
Ensembl hg19 (Hinxton)ENSG00000204010 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204010 [Gene_View]  chr10:89378056-89385205 [Contig_View]  IFIT1B [Vega]
ICGC DataPortalENSG00000204010
TCGA cBioPortalIFIT1B
AceView (NCBI)IFIT1B
Genatlas (Paris)IFIT1B
WikiGenes439996
SOURCE (Princeton)IFIT1B
Genetics Home Reference (NIH)IFIT1B
Genomic and cartography
GoldenPath hg38 (UCSC)IFIT1B  -     chr10:89378056-89385205 +  10q23.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)IFIT1B  -     10q23.31   [Description]    (hg19-Feb_2009)
EnsemblIFIT1B - 10q23.31 [CytoView hg19]  IFIT1B - 10q23.31 [CytoView hg38]
Mapping of homologs : NCBIIFIT1B [Mapview hg19]  IFIT1B [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC137368 BC137369 BC150189 BX647300
RefSeq transcript (Entrez)NM_001010987
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)IFIT1B
Cluster EST : UnigeneHs.500491 [ NCBI ]
CGAP (NCI)Hs.500491
Alternative Splicing GalleryENSG00000204010
Gene ExpressionIFIT1B [ NCBI-GEO ]   IFIT1B [ EBI - ARRAY_EXPRESS ]   IFIT1B [ SEEK ]   IFIT1B [ MEM ]
Gene Expression Viewer (FireBrowse)IFIT1B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)439996
GTEX Portal (Tissue expression)IFIT1B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5T764   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5T764  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5T764
Splice isoforms : SwissVarQ5T764
PhosPhoSitePlusQ5T764
Domaine pattern : Prosite (Expaxy)TPR (PS50005)    TPR_REGION (PS50293)   
Domains : Interpro (EBI)TPR-contain_dom    TPR-like_helical_dom    TPR_repeat   
Domain families : Pfam (Sanger)TPR_8 (PF13181)   
Domain families : Pfam (NCBI)pfam13181   
Domain families : Smart (EMBL)TPR (SM00028)  
Conserved Domain (NCBI)IFIT1B
DMDM Disease mutations439996
Blocks (Seattle)IFIT1B
SuperfamilyQ5T764
Human Protein AtlasENSG00000204010
Peptide AtlasQ5T764
HPRD17129
IPIIPI00456868   
Protein Interaction databases
DIP (DOE-UCLA)Q5T764
IntAct (EBI)Q5T764
FunCoupENSG00000204010
BioGRIDIFIT1B
STRING (EMBL)IFIT1B
ZODIACIFIT1B
Ontologies - Pathways
QuickGOQ5T764
Ontology : AmiGOprotein binding  defense response to virus  
Ontology : EGO-EBIprotein binding  defense response to virus  
Pathways : KEGGHepatitis C    Herpes simplex infection   
NDEx NetworkIFIT1B
Atlas of Cancer Signalling NetworkIFIT1B
Wikipedia pathwaysIFIT1B
Orthology - Evolution
OrthoDB439996
GeneTree (enSembl)ENSG00000204010
Phylogenetic Trees/Animal Genes : TreeFamIFIT1B
HOVERGENQ5T764
HOGENOMQ5T764
Homologs : HomoloGeneIFIT1B
Homology/Alignments : Family Browser (UCSC)IFIT1B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIFIT1B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IFIT1B
dbVarIFIT1B
ClinVarIFIT1B
1000_GenomesIFIT1B 
Exome Variant ServerIFIT1B
ExAC (Exome Aggregation Consortium)IFIT1B (select the gene name)
Genetic variants : HAPMAP439996
Genomic Variants (DGV)IFIT1B [DGVbeta]
DECIPHERIFIT1B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisIFIT1B 
Mutations
ICGC Data PortalIFIT1B 
TCGA Data PortalIFIT1B 
Broad Tumor PortalIFIT1B
OASIS PortalIFIT1B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICIFIT1B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDIFIT1B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch IFIT1B
DgiDB (Drug Gene Interaction Database)IFIT1B
DoCM (Curated mutations)IFIT1B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IFIT1B (select a term)
intoGenIFIT1B
Cancer3DIFIT1B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenIFIT1B
Genetic Testing Registry IFIT1B
NextProtQ5T764 [Medical]
TSGene439996
GENETestsIFIT1B
Target ValidationIFIT1B
Huge Navigator IFIT1B [HugePedia]
snp3D : Map Gene to Disease439996
BioCentury BCIQIFIT1B
ClinGenIFIT1B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD439996
Chemical/Pharm GKB GenePA165548753
Clinical trialIFIT1B
Miscellaneous
canSAR (ICR)IFIT1B (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineIFIT1B
EVEXIFIT1B
GoPubMedIFIT1B
iHOPIFIT1B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 1 16:17:37 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.