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IFIT1B (interferon induced protein with tetratricopeptide repeats 1B)

Identity

Alias (NCBI)IFIT1L
bA149I23.6
HGNC (Hugo) IFIT1B
HGNC Alias symbbA149I23.6
HGNC Previous nameIFIT1L
HGNC Previous nameinterferon-induced protein with tetratricopeptide repeats 1-like
 interferon-induced protein with tetratricopeptide repeats 1B
LocusID (NCBI) 439996
Atlas_Id 64509
Location 10q23.31  [Link to chromosome band 10q23]
Location_base_pair Starts at 89378056 and ends at 89385205 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)IFIT1B   23442
Cards
Entrez_Gene (NCBI)IFIT1B    interferon induced protein with tetratricopeptide repeats 1B
AliasesIFIT1L; bA149I23.6
GeneCards (Weizmann)IFIT1B
Ensembl hg19 (Hinxton)ENSG00000204010 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204010 [Gene_View]  ENSG00000204010 [Sequence]  chr10:89378056-89385205 [Contig_View]  IFIT1B [Vega]
ICGC DataPortalENSG00000204010
TCGA cBioPortalIFIT1B
AceView (NCBI)IFIT1B
Genatlas (Paris)IFIT1B
SOURCE (Princeton)IFIT1B
Genetics Home Reference (NIH)IFIT1B
Genomic and cartography
GoldenPath hg38 (UCSC)IFIT1B  -     chr10:89378056-89385205 +  10q23.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)IFIT1B  -     10q23.31   [Description]    (hg19-Feb_2009)
GoldenPathIFIT1B - 10q23.31 [CytoView hg19]  IFIT1B - 10q23.31 [CytoView hg38]
ImmunoBaseENSG00000204010
Genome Data Viewer NCBIIFIT1B [Mapview hg19]  
Gene and transcription
Genbank (Entrez)BC137368 BC137369 BC150189 BX647300
RefSeq transcript (Entrez)NM_001010987
Consensus coding sequences : CCDS (NCBI)IFIT1B
Gene ExpressionIFIT1B [ NCBI-GEO ]   IFIT1B [ EBI - ARRAY_EXPRESS ]   IFIT1B [ SEEK ]   IFIT1B [ MEM ]
Gene Expression Viewer (FireBrowse)IFIT1B [ Firebrowse - Broad ]
GenevisibleExpression of IFIT1B in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)439996
GTEX Portal (Tissue expression)IFIT1B
Human Protein AtlasENSG00000204010-IFIT1B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5T764   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5T764  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5T764
PhosPhoSitePlusQ5T764
Domaine pattern : Prosite (Expaxy)TPR (PS50005)    TPR_REGION (PS50293)   
Domains : Interpro (EBI)Interferon-induced_IFIT1-like    TPR-contain_dom    TPR-like_helical_dom_sf    TPR_repeat   
Domain families : Pfam (Sanger)TPR_7 (PF13176)    TPR_8 (PF13181)   
Domain families : Pfam (NCBI)pfam13176    pfam13181   
Domain families : Smart (EMBL)TPR (SM00028)  
Conserved Domain (NCBI)IFIT1B
SuperfamilyQ5T764
AlphaFold pdb e-kbQ5T764   
Human Protein Atlas [tissue]ENSG00000204010-IFIT1B [tissue]
HPRD17129
Protein Interaction databases
DIP (DOE-UCLA)Q5T764
IntAct (EBI)Q5T764
BioGRIDIFIT1B
STRING (EMBL)IFIT1B
ZODIACIFIT1B
Ontologies - Pathways
QuickGOQ5T764
Ontology : AmiGORNA binding  protein binding  cytosol  regulation of defense response to virus  defense response to virus  cellular response to type I interferon  cellular response to exogenous dsRNA  
Ontology : EGO-EBIRNA binding  protein binding  cytosol  regulation of defense response to virus  defense response to virus  cellular response to type I interferon  cellular response to exogenous dsRNA  
NDEx NetworkIFIT1B
Atlas of Cancer Signalling NetworkIFIT1B
Wikipedia pathwaysIFIT1B
Orthology - Evolution
OrthoDB439996
GeneTree (enSembl)ENSG00000204010
Phylogenetic Trees/Animal Genes : TreeFamIFIT1B
Homologs : HomoloGeneIFIT1B
Homology/Alignments : Family Browser (UCSC)IFIT1B
Gene fusions - Rearrangements
Fusion : QuiverIFIT1B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIFIT1B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IFIT1B
dbVarIFIT1B
ClinVarIFIT1B
MonarchIFIT1B
1000_GenomesIFIT1B 
Exome Variant ServerIFIT1B
GNOMAD BrowserENSG00000204010
Varsome BrowserIFIT1B
ACMGIFIT1B variants
VarityQ5T764
Genomic Variants (DGV)IFIT1B [DGVbeta]
DECIPHERIFIT1B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisIFIT1B 
Mutations
ICGC Data PortalIFIT1B 
TCGA Data PortalIFIT1B 
Broad Tumor PortalIFIT1B
OASIS PortalIFIT1B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICIFIT1B  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DIFIT1B
Mutations and Diseases : HGMDIFIT1B
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaIFIT1B
DgiDB (Drug Gene Interaction Database)IFIT1B
DoCM (Curated mutations)IFIT1B
CIViC (Clinical Interpretations of Variants in Cancer)IFIT1B
Cancer3DIFIT1B
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETIFIT1B
MedgenIFIT1B
Genetic Testing Registry IFIT1B
NextProtQ5T764 [Medical]
GENETestsIFIT1B
Target ValidationIFIT1B
Huge Navigator IFIT1B [HugePedia]
ClinGenIFIT1B
Clinical trials, drugs, therapy
MyCancerGenomeIFIT1B
Protein Interactions : CTDIFIT1B
Pharm GKB GenePA165548753
PharosQ5T764
Clinical trialIFIT1B
Miscellaneous
canSAR (ICR)IFIT1B
HarmonizomeIFIT1B
DataMed IndexIFIT1B
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXIFIT1B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:53:28 CEST 2021

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