Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

IFIT5 (interferon-induced protein with tetratricopeptide repeats 5)

Identity

Alias_namesinterferon-induced protein with tetratricopeptide repeats 5
Alias_symbol (synonym)RI58
Other aliasISG58
P58
HGNC (Hugo) IFIT5
LocusID (NCBI) 24138
Atlas_Id 64510
Location 10q23.31  [Link to chromosome band 10q23]
Location_base_pair Starts at 91174325 and ends at 91180759 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ANK3 (10q21.2) / IFIT5 (10q23.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)IFIT5   13328
Cards
Entrez_Gene (NCBI)IFIT5  24138  interferon-induced protein with tetratricopeptide repeats 5
AliasesISG58; P58; RI58
GeneCards (Weizmann)IFIT5
Ensembl hg19 (Hinxton)ENSG00000152778 [Gene_View]  chr10:91174325-91180759 [Contig_View]  IFIT5 [Vega]
Ensembl hg38 (Hinxton)ENSG00000152778 [Gene_View]  chr10:91174325-91180759 [Contig_View]  IFIT5 [Vega]
ICGC DataPortalENSG00000152778
TCGA cBioPortalIFIT5
AceView (NCBI)IFIT5
Genatlas (Paris)IFIT5
WikiGenes24138
SOURCE (Princeton)IFIT5
Genetics Home Reference (NIH)IFIT5
Genomic and cartography
GoldenPath hg19 (UCSC)IFIT5  -     chr10:91174325-91180759 +  10q23.31   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)IFIT5  -     10q23.31   [Description]    (hg38-Dec_2013)
EnsemblIFIT5 - 10q23.31 [CytoView hg19]  IFIT5 - 10q23.31 [CytoView hg38]
Mapping of homologs : NCBIIFIT5 [Mapview hg19]  IFIT5 [Mapview hg38]
OMIM616135   
Gene and transcription
Genbank (Entrez)AK293346 AK312358 BC025786 CR457031 DC392439
RefSeq transcript (Entrez)NM_012420
RefSeq genomic (Entrez)NC_000010 NC_018921 NT_030059 NW_004929376
Consensus coding sequences : CCDS (NCBI)IFIT5
Cluster EST : UnigeneHs.252839 [ NCBI ]
CGAP (NCI)Hs.252839
Alternative Splicing GalleryENSG00000152778
Gene ExpressionIFIT5 [ NCBI-GEO ]   IFIT5 [ EBI - ARRAY_EXPRESS ]   IFIT5 [ SEEK ]   IFIT5 [ MEM ]
Gene Expression Viewer (FireBrowse)IFIT5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)24138
GTEX Portal (Tissue expression)IFIT5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ13325   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ13325  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ13325
Splice isoforms : SwissVarQ13325
PhosPhoSitePlusQ13325
Domaine pattern : Prosite (Expaxy)TPR (PS50005)    TPR_REGION (PS50293)   
Domains : Interpro (EBI)Interferon_induced_IFIT5    TPR-contain_dom    TPR-like_helical_dom    TPR_1    TPR_2    TPR_repeat   
Domain families : Pfam (Sanger)TPR_1 (PF00515)    TPR_2 (PF07719)   
Domain families : Pfam (NCBI)pfam00515    pfam07719   
Domain families : Smart (EMBL)TPR (SM00028)  
Conserved Domain (NCBI)IFIT5
DMDM Disease mutations24138
Blocks (Seattle)IFIT5
PDB (SRS)3ZGQ    4HOQ    4HOR    4HOS    4HOT    4J0U   
PDB (PDBSum)3ZGQ    4HOQ    4HOR    4HOS    4HOT    4J0U   
PDB (IMB)3ZGQ    4HOQ    4HOR    4HOS    4HOT    4J0U   
PDB (RSDB)3ZGQ    4HOQ    4HOR    4HOS    4HOT    4J0U   
Structural Biology KnowledgeBase3ZGQ    4HOQ    4HOR    4HOS    4HOT    4J0U   
SCOP (Structural Classification of Proteins)3ZGQ    4HOQ    4HOR    4HOS    4HOT    4J0U   
CATH (Classification of proteins structures)3ZGQ    4HOQ    4HOR    4HOS    4HOT    4J0U   
SuperfamilyQ13325
Human Protein AtlasENSG00000152778
Peptide AtlasQ13325
HPRD17130
IPIIPI00012756   IPI00908843   
Protein Interaction databases
DIP (DOE-UCLA)Q13325
IntAct (EBI)Q13325
FunCoupENSG00000152778
BioGRIDIFIT5
STRING (EMBL)IFIT5
ZODIACIFIT5
Ontologies - Pathways
QuickGOQ13325
Ontology : AmiGOtRNA binding  RNA binding  single-stranded RNA binding  actin cytoskeleton  ruffle membrane  poly(A) RNA binding  innate immune response  apical part of cell  defense response to virus  
Ontology : EGO-EBItRNA binding  RNA binding  single-stranded RNA binding  actin cytoskeleton  ruffle membrane  poly(A) RNA binding  innate immune response  apical part of cell  defense response to virus  
NDEx NetworkIFIT5
Atlas of Cancer Signalling NetworkIFIT5
Wikipedia pathwaysIFIT5
Orthology - Evolution
OrthoDB24138
GeneTree (enSembl)ENSG00000152778
Phylogenetic Trees/Animal Genes : TreeFamIFIT5
HOVERGENQ13325
HOGENOMQ13325
Homologs : HomoloGeneIFIT5
Homology/Alignments : Family Browser (UCSC)IFIT5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIFIT5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IFIT5
dbVarIFIT5
ClinVarIFIT5
1000_GenomesIFIT5 
Exome Variant ServerIFIT5
ExAC (Exome Aggregation Consortium)IFIT5 (select the gene name)
Genetic variants : HAPMAP24138
Genomic Variants (DGV)IFIT5 [DGVbeta]
DECIPHER (Syndromes)10:91174325-91180759  ENSG00000152778
CONAN: Copy Number AnalysisIFIT5 
Mutations
ICGC Data PortalIFIT5 
TCGA Data PortalIFIT5 
Broad Tumor PortalIFIT5
OASIS PortalIFIT5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICIFIT5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDIFIT5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch IFIT5
DgiDB (Drug Gene Interaction Database)IFIT5
DoCM (Curated mutations)IFIT5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IFIT5 (select a term)
intoGenIFIT5
Cancer3DIFIT5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616135   
Orphanet
MedgenIFIT5
Genetic Testing Registry IFIT5
NextProtQ13325 [Medical]
TSGene24138
GENETestsIFIT5
Huge Navigator IFIT5 [HugePedia]
snp3D : Map Gene to Disease24138
BioCentury BCIQIFIT5
ClinGenIFIT5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD24138
Chemical/Pharm GKB GenePA134988392
Clinical trialIFIT5
Miscellaneous
canSAR (ICR)IFIT5 (select the gene name)
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineIFIT5
EVEXIFIT5
GoPubMedIFIT5
iHOPIFIT5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:08:31 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.