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IFITM1 (interferon induced transmembrane protein 1)

Identity

Alias_namesIFI17
interferon induced transmembrane protein 1 (9-27)
Alias_symbol (synonym)9-27
CD225
Other aliasDSPA2a
LEU13
HGNC (Hugo) IFITM1
LocusID (NCBI) 8519
Atlas_Id 43707
Location 11p15.5  [Link to chromosome band 11p15]
Location_base_pair Starts at 313991 and ends at 315272 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
IFITM1 (11p15.5) / CRIM1 (2p22.3)SLC1A3 (5p13.2) / IFITM1 (11p15.5)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)IFITM1   5412
Cards
Entrez_Gene (NCBI)IFITM1  8519  interferon induced transmembrane protein 1
Aliases9-27; CD225; DSPA2a; IFI17; 
LEU13
GeneCards (Weizmann)IFITM1
Ensembl hg19 (Hinxton)ENSG00000185885 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000185885 [Gene_View]  chr11:313991-315272 [Contig_View]  IFITM1 [Vega]
ICGC DataPortalENSG00000185885
TCGA cBioPortalIFITM1
AceView (NCBI)IFITM1
Genatlas (Paris)IFITM1
WikiGenes8519
SOURCE (Princeton)IFITM1
Genetics Home Reference (NIH)IFITM1
Genomic and cartography
GoldenPath hg38 (UCSC)IFITM1  -     chr11:313991-315272 +  11p15.5   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)IFITM1  -     11p15.5   [Description]    (hg19-Feb_2009)
EnsemblIFITM1 - 11p15.5 [CytoView hg19]  IFITM1 - 11p15.5 [CytoView hg38]
Mapping of homologs : NCBIIFITM1 [Mapview hg19]  IFITM1 [Mapview hg38]
OMIM604456   
Gene and transcription
Genbank (Entrez)AK290480 BC000897 BT007173 DQ891094 DQ894276
RefSeq transcript (Entrez)NM_003641
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)IFITM1
Cluster EST : UnigeneHs.458414 [ NCBI ]
CGAP (NCI)Hs.458414
Alternative Splicing GalleryENSG00000185885
Gene ExpressionIFITM1 [ NCBI-GEO ]   IFITM1 [ EBI - ARRAY_EXPRESS ]   IFITM1 [ SEEK ]   IFITM1 [ MEM ]
Gene Expression Viewer (FireBrowse)IFITM1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8519
GTEX Portal (Tissue expression)IFITM1
Protein : pattern, domain, 3D structure
UniProt/SwissProtP13164   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP13164  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP13164
Splice isoforms : SwissVarP13164
PhosPhoSitePlusP13164
Domains : Interpro (EBI)CD225/Dispanin_fam   
Domain families : Pfam (Sanger)CD225 (PF04505)   
Domain families : Pfam (NCBI)pfam04505   
Conserved Domain (NCBI)IFITM1
DMDM Disease mutations8519
Blocks (Seattle)IFITM1
SuperfamilyP13164
Human Protein AtlasENSG00000185885
Peptide AtlasP13164
HPRD05122
IPIIPI00300620   IPI00940995   
Protein Interaction databases
DIP (DOE-UCLA)P13164
IntAct (EBI)P13164
FunCoupENSG00000185885
BioGRIDIFITM1
STRING (EMBL)IFITM1
ZODIACIFITM1
Ontologies - Pathways
QuickGOP13164
Ontology : AmiGOossification  signal transducer activity, downstream of receptor  protein binding  plasma membrane  cell surface receptor signaling pathway  negative regulation of cell proliferation  response to virus  membrane  integral component of membrane  negative regulation of cell migration  response to interferon-gamma  response to interferon-alpha  response to interferon-beta  negative regulation of viral genome replication  negative regulation of viral genome replication  positive regulation of osteoblast differentiation  negative regulation of viral entry into host cell  regulation of immune response  defense response to virus  type I interferon signaling pathway  
Ontology : EGO-EBIossification  signal transducer activity, downstream of receptor  protein binding  plasma membrane  cell surface receptor signaling pathway  negative regulation of cell proliferation  response to virus  membrane  integral component of membrane  negative regulation of cell migration  response to interferon-gamma  response to interferon-alpha  response to interferon-beta  negative regulation of viral genome replication  negative regulation of viral genome replication  positive regulation of osteoblast differentiation  negative regulation of viral entry into host cell  regulation of immune response  defense response to virus  type I interferon signaling pathway  
Pathways : KEGGB cell receptor signaling pathway   
NDEx NetworkIFITM1
Atlas of Cancer Signalling NetworkIFITM1
Wikipedia pathwaysIFITM1
Orthology - Evolution
OrthoDB8519
GeneTree (enSembl)ENSG00000185885
Phylogenetic Trees/Animal Genes : TreeFamIFITM1
HOVERGENP13164
HOGENOMP13164
Homologs : HomoloGeneIFITM1
Homology/Alignments : Family Browser (UCSC)IFITM1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIFITM1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IFITM1
dbVarIFITM1
ClinVarIFITM1
1000_GenomesIFITM1 
Exome Variant ServerIFITM1
ExAC (Exome Aggregation Consortium)IFITM1 (select the gene name)
Genetic variants : HAPMAP8519
Genomic Variants (DGV)IFITM1 [DGVbeta]
DECIPHERIFITM1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisIFITM1 
Mutations
ICGC Data PortalIFITM1 
TCGA Data PortalIFITM1 
Broad Tumor PortalIFITM1
OASIS PortalIFITM1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICIFITM1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDIFITM1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch IFITM1
DgiDB (Drug Gene Interaction Database)IFITM1
DoCM (Curated mutations)IFITM1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IFITM1 (select a term)
intoGenIFITM1
Cancer3DIFITM1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604456   
Orphanet
MedgenIFITM1
Genetic Testing Registry IFITM1
NextProtP13164 [Medical]
TSGene8519
GENETestsIFITM1
Huge Navigator IFITM1 [HugePedia]
snp3D : Map Gene to Disease8519
BioCentury BCIQIFITM1
ClinGenIFITM1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8519
Chemical/Pharm GKB GenePA29653
Clinical trialIFITM1
Miscellaneous
canSAR (ICR)IFITM1 (select the gene name)
Probes
Litterature
PubMed58 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineIFITM1
EVEXIFITM1
GoPubMedIFITM1
iHOPIFITM1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:19:54 CEST 2017

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