Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

IFITM10 (interferon induced transmembrane protein 10)

Identity

Other aliasDSPA3
HGNC (Hugo) IFITM10
LocusID (NCBI) 402778
Atlas_Id 64511
Location 11p15.5  [Link to chromosome band 11p15]
Location_base_pair Starts at 1732410 and ends at 1750594 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)		CTSD (11p15.5) / IFITM10 (11p15.5)IFITM10 (11p15.5) / DENND5A (11p15.4)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)IFITM10   40022
Cards
Entrez_Gene (NCBI)IFITM10  402778  interferon induced transmembrane protein 10
AliasesDSPA3
GeneCards (Weizmann)IFITM10
Ensembl hg19 (Hinxton)ENSG00000244242 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000244242 [Gene_View]  chr11:1732410-1750594 [Contig_View]  IFITM10 [Vega]
ICGC DataPortalENSG00000244242
TCGA cBioPortalIFITM10
AceView (NCBI)IFITM10
Genatlas (Paris)IFITM10
WikiGenes402778
SOURCE (Princeton)IFITM10
Genetics Home Reference (NIH)IFITM10
Genomic and cartography
GoldenPath hg38 (UCSC)IFITM10  -     chr11:1732410-1750594 -  11p15.5   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)IFITM10  -     11p15.5   [Description]    (hg19-Feb_2009)
EnsemblIFITM10 - 11p15.5 [CytoView hg19]  IFITM10 - 11p15.5 [CytoView hg38]
Mapping of homologs : NCBIIFITM10 [Mapview hg19]  IFITM10 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK022293 AK289574 BC036199 BM728073 BQ183689
RefSeq transcript (Entrez)NM_001170820
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_187657
Consensus coding sequences : CCDS (NCBI)IFITM10
Cluster EST : UnigeneHs.121575 [ NCBI ]
CGAP (NCI)Hs.121575
Alternative Splicing GalleryENSG00000244242
Gene ExpressionIFITM10 [ NCBI-GEO ]   IFITM10 [ EBI - ARRAY_EXPRESS ]   IFITM10 [ SEEK ]   IFITM10 [ MEM ]
Gene Expression Viewer (FireBrowse)IFITM10 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)402778
GTEX Portal (Tissue expression)IFITM10
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NMD0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NMD0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NMD0
Splice isoforms : SwissVarA6NMD0
PhosPhoSitePlusA6NMD0
Domains : Interpro (EBI)CD225/Dispanin_fam   
Domain families : Pfam (Sanger)CD225 (PF04505)   
Domain families : Pfam (NCBI)pfam04505   
Conserved Domain (NCBI)IFITM10
DMDM Disease mutations402778
Blocks (Seattle)IFITM10
SuperfamilyA6NMD0
Human Protein AtlasENSG00000244242
Peptide AtlasA6NMD0
IPIIPI00658050   IPI00414269   
Protein Interaction databases
DIP (DOE-UCLA)A6NMD0
IntAct (EBI)A6NMD0
FunCoupENSG00000244242
BioGRIDIFITM10
STRING (EMBL)IFITM10
ZODIACIFITM10
Ontologies - Pathways
QuickGOA6NMD0
Ontology : AmiGOplasma membrane  response to biotic stimulus  integral component of membrane  
Ontology : EGO-EBIplasma membrane  response to biotic stimulus  integral component of membrane  
NDEx NetworkIFITM10
Atlas of Cancer Signalling NetworkIFITM10
Wikipedia pathwaysIFITM10
Orthology - Evolution
OrthoDB402778
GeneTree (enSembl)ENSG00000244242
Phylogenetic Trees/Animal Genes : TreeFamIFITM10
HOVERGENA6NMD0
HOGENOMA6NMD0
Homologs : HomoloGeneIFITM10
Homology/Alignments : Family Browser (UCSC)IFITM10
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIFITM10 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IFITM10
dbVarIFITM10
ClinVarIFITM10
1000_GenomesIFITM10 
Exome Variant ServerIFITM10
ExAC (Exome Aggregation Consortium)IFITM10 (select the gene name)
Genetic variants : HAPMAP402778
Genomic Variants (DGV)IFITM10 [DGVbeta]
DECIPHERIFITM10 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisIFITM10 
Mutations
ICGC Data PortalIFITM10 
TCGA Data PortalIFITM10 
Broad Tumor PortalIFITM10
OASIS PortalIFITM10 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICIFITM10  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDIFITM10
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch IFITM10
DgiDB (Drug Gene Interaction Database)IFITM10
DoCM (Curated mutations)IFITM10 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IFITM10 (select a term)
intoGenIFITM10
Cancer3DIFITM10(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenIFITM10
Genetic Testing Registry IFITM10
NextProtA6NMD0 [Medical]
TSGene402778
GENETestsIFITM10
Target ValidationIFITM10
Huge Navigator IFITM10 [HugePedia]
snp3D : Map Gene to Disease402778
BioCentury BCIQIFITM10
ClinGenIFITM10
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD402778
Chemical/Pharm GKB GenePA166049045
Clinical trialIFITM10
Miscellaneous
canSAR (ICR)IFITM10 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineIFITM10
EVEXIFITM10
GoPubMedIFITM10
iHOPIFITM10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:10:59 CEST 2017
Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.