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IFITM10 (interferon induced transmembrane protein 10)

Identity

Alias (NCBI)DSPA3
HGNC (Hugo) IFITM10
LocusID (NCBI) 402778
Atlas_Id 64511
Location 11p15.5  [Link to chromosome band 11p15]
Location_base_pair Starts at 1732410 and ends at 1750594 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CTSD (11p15.5) / IFITM10 (11p15.5)IFITM10 (11p15.5) / DENND5A (11p15.4)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 3 ]
  CTSD/IFITM10 (11p15)
CTSD/IFITM10 (11p15)
IFITM10/DENND5A (11p15)

External links

Nomenclature
HGNC (Hugo)IFITM10   40022
Cards
Entrez_Gene (NCBI)IFITM10    interferon induced transmembrane protein 10
AliasesDSPA3
GeneCards (Weizmann)IFITM10
Ensembl hg19 (Hinxton)ENSG00000244242 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000244242 [Gene_View]  ENSG00000244242 [Sequence]  chr11:1732410-1750594 [Contig_View]  IFITM10 [Vega]
ICGC DataPortalENSG00000244242
TCGA cBioPortalIFITM10
AceView (NCBI)IFITM10
Genatlas (Paris)IFITM10
SOURCE (Princeton)IFITM10
Genetics Home Reference (NIH)IFITM10
Genomic and cartography
GoldenPath hg38 (UCSC)IFITM10  -     chr11:1732410-1750594 -  11p15.5   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)IFITM10  -     11p15.5   [Description]    (hg19-Feb_2009)
GoldenPathIFITM10 - 11p15.5 [CytoView hg19]  IFITM10 - 11p15.5 [CytoView hg38]
ImmunoBaseENSG00000244242
genome Data Viewer NCBIIFITM10 [Mapview hg19]  
OMIM618293   
Gene and transcription
Genbank (Entrez)AK022293 AK289574 BC036199 BM728073 BQ183689
RefSeq transcript (Entrez)NM_001170820
RefSeq genomic (Entrez)NC_000011 NT_187657
Consensus coding sequences : CCDS (NCBI)IFITM10
Alternative Splicing GalleryENSG00000244242
Gene ExpressionIFITM10 [ NCBI-GEO ]   IFITM10 [ EBI - ARRAY_EXPRESS ]   IFITM10 [ SEEK ]   IFITM10 [ MEM ]
Gene Expression Viewer (FireBrowse)IFITM10 [ Firebrowse - Broad ]
GenevisibleExpression of IFITM10 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)402778
GTEX Portal (Tissue expression)IFITM10
Human Protein AtlasENSG00000244242-IFITM10 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NMD0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NMD0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NMD0
Splice isoforms : SwissVarA6NMD0
PhosPhoSitePlusA6NMD0
Domains : Interpro (EBI)CD225/Dispanin_fam   
Domain families : Pfam (Sanger)CD225 (PF04505)   
Domain families : Pfam (NCBI)pfam04505   
Conserved Domain (NCBI)IFITM10
Blocks (Seattle)IFITM10
SuperfamilyA6NMD0
Human Protein Atlas [tissue]ENSG00000244242-IFITM10 [tissue]
Peptide AtlasA6NMD0
IPIIPI00658050   IPI00414269   
Protein Interaction databases
DIP (DOE-UCLA)A6NMD0
IntAct (EBI)A6NMD0
BioGRIDIFITM10
STRING (EMBL)IFITM10
ZODIACIFITM10
Ontologies - Pathways
QuickGOA6NMD0
Ontology : AmiGOplasma membrane  integral component of membrane  
Ontology : EGO-EBIplasma membrane  integral component of membrane  
NDEx NetworkIFITM10
Atlas of Cancer Signalling NetworkIFITM10
Wikipedia pathwaysIFITM10
Orthology - Evolution
OrthoDB402778
GeneTree (enSembl)ENSG00000244242
Phylogenetic Trees/Animal Genes : TreeFamIFITM10
HOGENOMA6NMD0
Homologs : HomoloGeneIFITM10
Homology/Alignments : Family Browser (UCSC)IFITM10
Gene fusions - Rearrangements
Fusion : QuiverIFITM10
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIFITM10 [hg38]
dbVarIFITM10
ClinVarIFITM10
MonarchIFITM10
1000_GenomesIFITM10 
Exome Variant ServerIFITM10
GNOMAD BrowserENSG00000244242
Varsome BrowserIFITM10
Genomic Variants (DGV)IFITM10 [DGVbeta]
DECIPHERIFITM10 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisIFITM10 
Mutations
ICGC Data PortalIFITM10 
TCGA Data PortalIFITM10 
Broad Tumor PortalIFITM10
OASIS PortalIFITM10 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICIFITM10  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DIFITM10
Mutations and Diseases : HGMDIFITM10
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch IFITM10
DgiDB (Drug Gene Interaction Database)IFITM10
DoCM (Curated mutations)IFITM10 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IFITM10 (select a term)
intoGenIFITM10
Cancer3DIFITM10(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM618293   
Orphanet
DisGeNETIFITM10
MedgenIFITM10
Genetic Testing Registry IFITM10
NextProtA6NMD0 [Medical]
GENETestsIFITM10
Target ValidationIFITM10
Huge Navigator IFITM10 [HugePedia]
ClinGenIFITM10
Clinical trials, drugs, therapy
MyCancerGenomeIFITM10
Protein Interactions : CTD
Pharm GKB GenePA166049045
Clinical trialIFITM10
Miscellaneous
canSAR (ICR)IFITM10 (select the gene name)
HarmonizomeIFITM10
DataMed IndexIFITM10
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineIFITM10
EVEXIFITM10
GoPubMedIFITM10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Dec 5 16:57:33 CET 2020
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