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IFITM5 (interferon induced transmembrane protein 5)

Identity

Alias_symbol (synonym)fragilis4
Hrmp1
BRIL
Other aliasDSPA1
OI5
HGNC (Hugo) IFITM5
LocusID (NCBI) 387733
Atlas_Id 64513
Location 11p15.5  [Link to chromosome band 11p15]
Location_base_pair Starts at 298201 and ends at 299526 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)IFITM5   16644
Cards
Entrez_Gene (NCBI)IFITM5  387733  interferon induced transmembrane protein 5
AliasesBRIL; DSPA1; Hrmp1; OI5; 
fragilis4
GeneCards (Weizmann)IFITM5
Ensembl hg19 (Hinxton)ENSG00000206013 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000206013 [Gene_View]  chr11:298201-299526 [Contig_View]  IFITM5 [Vega]
ICGC DataPortalENSG00000206013
TCGA cBioPortalIFITM5
AceView (NCBI)IFITM5
Genatlas (Paris)IFITM5
WikiGenes387733
SOURCE (Princeton)IFITM5
Genetics Home Reference (NIH)IFITM5
Genomic and cartography
GoldenPath hg38 (UCSC)IFITM5  -     chr11:298201-299526 -  11p15.5   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)IFITM5  -     11p15.5   [Description]    (hg19-Feb_2009)
EnsemblIFITM5 - 11p15.5 [CytoView hg19]  IFITM5 - 11p15.5 [CytoView hg38]
Mapping of homologs : NCBIIFITM5 [Mapview hg19]  IFITM5 [Mapview hg38]
OMIM610967   614757   
Gene and transcription
Genbank (Entrez)AA460254 BC150562 BC150563 BC156100 BC156992
RefSeq transcript (Entrez)NM_001025295
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)IFITM5
Cluster EST : UnigeneHs.443469 [ NCBI ]
CGAP (NCI)Hs.443469
Alternative Splicing GalleryENSG00000206013
Gene ExpressionIFITM5 [ NCBI-GEO ]   IFITM5 [ EBI - ARRAY_EXPRESS ]   IFITM5 [ SEEK ]   IFITM5 [ MEM ]
Gene Expression Viewer (FireBrowse)IFITM5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)387733
GTEX Portal (Tissue expression)IFITM5
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NNB3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NNB3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NNB3
Splice isoforms : SwissVarA6NNB3
PhosPhoSitePlusA6NNB3
Domains : Interpro (EBI)CD225/Dispanin_fam   
Domain families : Pfam (Sanger)CD225 (PF04505)   
Domain families : Pfam (NCBI)pfam04505   
Conserved Domain (NCBI)IFITM5
DMDM Disease mutations387733
Blocks (Seattle)IFITM5
SuperfamilyA6NNB3
Human Protein AtlasENSG00000206013
Peptide AtlasA6NNB3
IPIIPI00375820   
Protein Interaction databases
DIP (DOE-UCLA)A6NNB3
IntAct (EBI)A6NNB3
FunCoupENSG00000206013
BioGRIDIFITM5
STRING (EMBL)IFITM5
ZODIACIFITM5
Ontologies - Pathways
QuickGOA6NNB3
Ontology : AmiGOin utero embryonic development  integral component of plasma membrane  response to biotic stimulus  bone mineralization  regulation of bone mineralization  bone morphogenesis  
Ontology : EGO-EBIin utero embryonic development  integral component of plasma membrane  response to biotic stimulus  bone mineralization  regulation of bone mineralization  bone morphogenesis  
NDEx NetworkIFITM5
Atlas of Cancer Signalling NetworkIFITM5
Wikipedia pathwaysIFITM5
Orthology - Evolution
OrthoDB387733
GeneTree (enSembl)ENSG00000206013
Phylogenetic Trees/Animal Genes : TreeFamIFITM5
HOVERGENA6NNB3
HOGENOMA6NNB3
Homologs : HomoloGeneIFITM5
Homology/Alignments : Family Browser (UCSC)IFITM5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIFITM5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IFITM5
dbVarIFITM5
ClinVarIFITM5
1000_GenomesIFITM5 
Exome Variant ServerIFITM5
ExAC (Exome Aggregation Consortium)IFITM5 (select the gene name)
Genetic variants : HAPMAP387733
Genomic Variants (DGV)IFITM5 [DGVbeta]
DECIPHERIFITM5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisIFITM5 
Mutations
ICGC Data PortalIFITM5 
TCGA Data PortalIFITM5 
Broad Tumor PortalIFITM5
OASIS PortalIFITM5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICIFITM5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDIFITM5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)Osteogenesis Imperfecta Variant Database
BioMutasearch IFITM5
DgiDB (Drug Gene Interaction Database)IFITM5
DoCM (Curated mutations)IFITM5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IFITM5 (select a term)
intoGenIFITM5
Cancer3DIFITM5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610967    614757   
Orphanet18795   
MedgenIFITM5
Genetic Testing Registry IFITM5
NextProtA6NNB3 [Medical]
TSGene387733
GENETestsIFITM5
Target ValidationIFITM5
Huge Navigator IFITM5 [HugePedia]
snp3D : Map Gene to Disease387733
BioCentury BCIQIFITM5
ClinGenIFITM5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD387733
Chemical/Pharm GKB GenePA162391894
Clinical trialIFITM5
Miscellaneous
canSAR (ICR)IFITM5 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineIFITM5
EVEXIFITM5
GoPubMedIFITM5
iHOPIFITM5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:53:09 CEST 2017

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