Atlas of Genetics and Cytogenetics in Oncology and Haematology

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IFNA1 (interferon, alpha 1)

Identity

Other namesIFL
IFN
IFN-ALPHA
IFNA13
IFNA@
MGC138207
MGC138505
MGC138507
HGNC (Hugo) IFNA1
Location 9p21.3
Location_base_pair Starts at 21430440 and ends at 21431315 bp from pter ( according to hg18-March_2006)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)IFNA1   5417
Entrez_Gene (NCBI)IFNA1  3439  interferon, alpha 1
Cards
GeneCards (Weizmann)IFNA1
Ensembl (Hinxton)ENSG00000197919 [Gene_View]  IFNA1 [Vega]
AceView (NCBI)IFNA1
Genatlas (Paris)IFNA1
euGene (Indiana)3439
SOURCE (Stanford)NM_024013
Gene Expression (Array Express) ENSG00000197919
Genomic and cartography
GoldenPath (UCSC)IFNA1  -  9p21.3   chr9:21430440-21431315 +  9p21.3   [Description]    (hg18-March_2006)
EnsemblIFNA1 - 9p21.3 [CytoView]
Mapping of homologs : NCBIIFNA1 [Mapview]
OMIM147660   
Gene and transcription
Gene : Genbank (Entrez)BC074928 BC074929 BC112002 BC112300 BC112302
Reference sequence (RefSeq transcript) :SRSNM_024013
Reference transcript : EntrezNM_024013
RefSeq genomic : SRSAC_000052 AC_000141 NC_000009 NT_008413 NW_001839149 NW_924062
RefSeq genomic : EntrezAC_000052 AC_000141 NC_000009 NT_008413 NW_001839149 NW_924062
Consensus coding sequences : CCDS NCBIIFNA1
Cluster EST : UnigeneHs.37026 [ SRS ] Hs.37026 [ NCBI ]
Protein : pattern, domain, 3D structure
Protein : UniProt/SwissProtP01562 (SRS) P01562 (Expasy) P01562 (Uniprot)
With graphics : InterProP01562
Splice isoforms : VarSplice FASTAP01562(VarSplice FASTA)
Domaine pattern : Prosite (SRS)INTERFERON_A_B_D (PS00252)   
Domain pattern : Prosite (Expaxy)INTERFERON_A_B_D (PS00252)   
Domains : Interpro (SRS)4_helix_cytokine-like_core    IInterferon_alpha/beta/delta    Interferon_alpha   
Domains : Interpro (EBI)4_helix_cytokine-like_core    IInterferon_alpha/beta/delta    Interferon_alpha   
Related proteins : CluSTrP01562
Domain families : Pfam SRSInterferon (PF00143)   
Domain families : Pfam SangerInterferon (PF00143)   
Domain families : Pfam NCBIpfam00143   
Domain families : Smart EMBLIFabd (SM00076)  
Blocks (Seattle)P01562
Crystal structure of protein : PDB SRS
Crystal structure of protein : PDBSum
Crystal structure of protein : IMB
Crystal structure of protein : PDB RSDB
HPRD00974
Protein Interaction databases
DIP (DOE-UCLA)P01562
IntAct (EBI)P01562
Polymorphism : SNP, mutations, diseases
Single Nucleotide Polymorphism (SNP) : dbSNP NCBIIFNA1
SNP : GeneSNP UtahIFNA1
SNP : HGBaseIFNA1
Genetic variants : HAPMAPIFNA1
Somatic Mutations in Cancer : COSMICIFNA1 
Mutations and Diseases : HGMDIFNA1
Hereditary diseases : OMIM147660   
Hereditary diseases : GENETests147660   
Diseases : Genetic AssociationIFNA1
General knowledge
Homologs : HomoloGeneIFNA1
Homology/Alignments : Family Browser UCSCIFNA1
Phylogenetic Trees/Animal Genes : TreeFamIFNA1
Chemical/Protein Interactions : CTD3439
Keywords Ontology : AmiGO
Keywords Ontology : EGO-EBI
Pathways : BIOCARTA
Pathways : KEGGCytokine-cytokine receptor interactionRegulation of autophagyAntigen processing and presentationToll-like receptor signaling pathwayJak-STAT signaling pathwayNatural killer cell mediated cytotoxicity
Other databases
Probes
Probes : ImagenesIFNA1 Related clones (RZPD - Berlin)
Literature
PubMed140 Pubmed reference(s) in Entrez
PubGeneIFNA1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated03-2009Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Feb 27 10:29:29 CET 2010
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