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IFNA10 (interferon alpha 10)

Identity

Alias_symbol (synonym)IFN-alphaC
Other alias
HGNC (Hugo) IFNA10
LocusID (NCBI) 3446
Atlas_Id 56594
Location 9p21.3  [Link to chromosome band 9p21]
Location_base_pair Starts at 21206181 and ends at 21207143 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

,FONT(S ZE=4>DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)IFNA10   5418
Cards
Entrez_Gene (NCBI)IFNA10  3446  interferon alpha 10
AliasesIFN-alphaC
GeneCards (Weizmann)IFNA10
Ensembl hg19 (Hinxton)ENSG00000186803 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000186803 [Gene_View]  chr9:21206181-21207143 [Contig_View]  IFNA10 [Vega]
ICGC DataPortalENSG00000186803
TCGA cBioPortalIFNA10
AceView (NCBI)IFNA10
Genatlas (Paris)IFNA10
WikiGenes3446
SOURCE (Princeton)IFNA10
Genetics Home Reference (NIH)IFNA10
Genomic and cartography
GoldenPath hg38 (UCSC)IFNA10  -     chr9:21206181-21207143 -  9p21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)IFNA10  -     9p21.3   [Description]    (hg19-Feb_2009)
EnsemblIFNA10 - 9p21.3 [CytoView hg19]  IFNA10 - 9p21.3 [CytoView hg38]
Mapping of homologs : NCBIIFNA10 [Mapview hg19]  IFNA10 [Mapview hg38]
OMIM147577   
Gene and transcription
Genbank (Entrez)BC069409 BC103972 BC103973 V00551
RefSeq transcript (Entrez)NM_002171
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)IFNA10
Cluster EST : UnigeneHs.282275 [ NCBI ]
CGAP (NCI)Hs.282275
Alternative Splicing GalleryENSG00000186803
Gene ExpressionIFNA10 [ NCBI-GEO ]   IFNA10 [ EBI - ARRAY_EXPRESS ]   IFNA10 [ SEEK ]   IFNA10 [ MEM ]
Gene Expression Viewer (FireBrowse)IFNA10 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3446
GTEX Portal (Tissue expression)IFNA10
Human Protein AtlasENSG00000186803-IFNA10 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP01566   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP01566  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP01566
Splice isoforms : SwissVarP01566
PhosPhoSitePlusP01566
Domaine pattern : Prosite (Expaxy)INTERFERON_A_B_D (PS00252)   
Domains : Interpro (EBI)4_helix_cytokine-like_core    4_helix_cytokine_core    Interferon_alpha/beta/delta   
Domain families : Pfam (Sanger)Interferon (PF00143)   
Domain families : Pfam (NCBI)pfam00143   
Domain families : Smart (EMBL)IFabd (SM00076)  
Conserved Domain (NCBI)IFNA10
DMDM Disease mutations3446
Blocks (Seattle)IFNA10
SuperfamilyP01566
Human Protein Atlas [tissue]ENSG00000186803-IFNA10 [tissue]
Peptide AtlasP01566
HPRD00963
IPIIPI00003074   
Protein Interaction databases
DIP (DOE-UCLA)P01566
IntAct (EBI)P01566
FunCoupENSG00000186803
BioGRIDIFNA10
STRING (EMBL)IFNA10
ZODIACIFNA10
Ontologies - Pathways
QuickGOP01566
Ontology : AmiGOadaptive immune response  T cell activation involved in immune response  natural killer cell activation involved in immune response  cytokine activity  type I interferon receptor binding  extracellular region  extracellular space  humoral immune response  blood coagulation  cytokine-mediated signaling pathway  B cell differentiation  positive regulation of peptidyl-serine phosphorylation of STAT protein  B cell proliferation  response to exogenous dsRNA  innate immune response  defense response to virus  type I interferon signaling pathway  regulation of type I interferon-mediated signaling pathway  
Ontology : EGO-EBIadaptive immune response  T cell activation involved in immune response  natural killer cell activation involved in immune response  cytokine activity  type I interferon receptor binding  extracellular region  extracellular space  humoral immune response  blood coagulation  cytokine-mediated signaling pathway  B cell differentiation  positive regulation of peptidyl-serine phosphorylation of STAT protein  B cell proliferation  response to exogenous dsRNA  innate immune response  defense response to virus  type I interferon signaling pathway  regulation of type I interferon-mediated signaling pathway  
Pathways : KEGG   
NDEx NetworkIFNA10
Atlas of Cancer Signalling NetworkIFNA10
Wikipedia pathwaysIFNA10
Orthology - Evolution
OrthoDB3446
GeneTree (enSembl)ENSG00000186803
Phylogenetic Trees/Animal Genes : TreeFamIFNA10
HOVERGENP01566
HOGENOMP01566
Homologs : HomoloGeneIFNA10
Homology/Alignments : Family Browser (UCSC)IFNA10
Gene fusions - Rearrangements
Tumor Fusion PortalIFNA10
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIFNA10 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IFNA10
dbVarIFNA10
ClinVarIFNA10
1000_GenomesIFNA10 
Exome Variant ServerIFNA10
ExAC (Exome Aggregation Consortium)ENSG00000186803
GNOMAD BrowserENSG00000186803
Genetic variants : HAPMAP3446
Genomic Variants (DGV)IFNA10 [DGVbeta]
DECIPHERIFNA10 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisIFNA10 
Mutations
ICGC Data PortalIFNA10 
TCGA Data PortalIFNA10 
Broad Tumor PortalIFNA10
OASIS PortalIFNA10 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICIFNA10  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDIFNA10
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch IFNA10
DgiDB (Drug Gene Interaction Database)IFNA10
DoCM (Curated mutations)IFNA10 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IFNA10 (select a term)
intoGenIFNA10
Cancer3DIFNA10(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM147577   
Orphanet
DisGeNETIFNA10
MedgenIFNA10
Genetic Testing Registry IFNA10
NextProtP01566 [Medical]
TSGene3446
GENETestsIFNA10
Target ValidationIFNA10
Huge Navigator IFNA10 [HugePedia]
snp3D : Map Gene to Disease3446
BioCentury BCIQIFNA10
ClinGenIFNA10
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD3446
Chemical/Pharm GKB GenePA29657
Clinical trialIFNA10
Miscellaneous
canSAR (ICR)IFNA10 (select the gene name)
Probes
Litterature
PubMed66 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineIFNA10
EVEXIFNA10
GoPubMedIFNA10
iHOPIFNA10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:17:16 CET 2017

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