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IFNA13 (interferon, alpha 13)

Identity

Other names-
HGNC (Hugo) IFNA13
Location 9p21.3
Location_base_pair Starts at 21357371 and ends at 21358075 bp from pter ( according to hg18-March_2006)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)IFNA13   5419
Entrez_Gene (NCBI)IFNA13  3447  interferon, alpha 13
Cards
GeneCards (Weizmann)IFNA13
Ensembl (Hinxton)ENSG00000233816 [Gene_View]  IFNA13 [Vega]
AceView (NCBI)IFNA13
Genatlas (Paris)IFNA13
euGene (Indiana)3447
SOURCE (Stanford)NM_006900
Gene Expression (Array Express) ENSG00000233816
Genomic and cartography
GoldenPath (UCSC)IFNA13  -  9p21.3   chr9:21357371-21358075 -  9p21.3   [Description]    (hg18-March_2006)
EnsemblIFNA13 - 9p21.3 [CytoView]
Mapping of homologs : NCBIIFNA13 [Mapview]
OMIM147578   
Gene and transcription
Gene : Genbank (Entrez)BC069427 BC093988
Reference sequence (RefSeq transcript) :SRSNM_006900
Reference transcript : EntrezNM_006900
RefSeq genomic : SRSAC_000052 AC_000141 NC_000009 NT_008413 NW_001839149 NW_924062
RefSeq genomic : EntrezAC_000052 AC_000141 NC_000009 NT_008413 NW_001839149 NW_924062
Consensus coding sequences : CCDS NCBIIFNA13
Cluster EST : UnigeneHs.533471 [ SRS ] Hs.533471 [ NCBI ]
Alternative Splicing : Fast-db (Paris)3362
Protein : pattern, domain, 3D structure
Protein : UniProt/SwissProtP01562 (SRS) P01562 (Expasy) P01562 (Uniprot)
With graphics : InterProP01562
Splice isoforms : VarSplice FASTAP01562(VarSplice FASTA)
Domaine pattern : Prosite (SRS)INTERFERON_A_B_D (PS00252)   
Domain pattern : Prosite (Expaxy)INTERFERON_A_B_D (PS00252)   
Domains : Interpro (SRS)4_helix_cytokine-like_core    IInterferon_alpha/beta/delta    Interferon_alpha   
Domains : Interpro (EBI)4_helix_cytokine-like_core    IInterferon_alpha/beta/delta    Interferon_alpha   
Related proteins : CluSTrP01562
Domain families : Pfam SRSInterferon (PF00143)   
Domain families : Pfam SangerInterferon (PF00143)   
Domain families : Pfam NCBIpfam00143   
Domain families : Smart EMBLIFabd (SM00076)  
Blocks (Seattle)P01562
Crystal structure of protein : PDB SRS
Crystal structure of protein : PDBSum
Crystal structure of protein : IMB
Crystal structure of protein : PDB RSDB
HPRD00964
Protein Interaction databases
DIP (DOE-UCLA)P01562
IntAct (EBI)P01562
Polymorphism : SNP, mutations, diseases
Single Nucleotide Polymorphism (SNP) : dbSNP NCBIIFNA13
SNP : GeneSNP UtahIFNA13
SNP : HGBaseIFNA13
Genetic variants : HAPMAPIFNA13
Somatic Mutations in Cancer : COSMICIFNA13 
Mutations and Diseases : HGMDIFNA13
Hereditary diseases : OMIM147578   
Hereditary diseases : GENETests147578   
Diseases : Genetic AssociationIFNA13
General knowledge
Homologs : HomoloGeneIFNA13
Homology/Alignments : Family Browser UCSCIFNA13
Phylogenetic Trees/Animal Genes : TreeFamIFNA13
Chemical/Protein Interactions : CTD3447
Keywords Ontology : AmiGOcytokine activity  interferon-alpha/beta receptor binding  extracellular region  extracellular space  defense response  response to virus  
Keywords Ontology : EGO-EBIcytokine activity  interferon-alpha/beta receptor binding  extracellular region  extracellular space  defense response  response to virus  
Pathways : BIOCARTA
Pathways : KEGGCytokine-cytokine receptor interactionRegulation of autophagyAntigen processing and presentationToll-like receptor signaling pathwayJak-STAT signaling pathwayNatural killer cell mediated cytotoxicity
Other databases
Probes
Probes : ImagenesIFNA13 Related clones (RZPD - Berlin)
Literature
PubMed19 Pubmed reference(s) in Entrez
PubGeneIFNA13
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated03-2009Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Feb 27 10:43:12 CET 2010
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