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IFNA13 (interferon alpha 13)

Identity

Other alias-
HGNC (Hugo) IFNA13
LocusID (NCBI) 3447
Atlas_Id 40921
Location 9p21.3  [Link to chromosome band 9p21]
Location_base_pair Starts at 21367372 and ends at 21368076 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)IFNA13   5419
Cards
Entrez_Gene (NCBI)IFNA13  3447  interferon alpha 13
Aliases
GeneCards (Weizmann)IFNA13
Ensembl hg19 (Hinxton)ENSG00000233816 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000233816 [Gene_View]  chr9:21367372-21368076 [Contig_View]  IFNA13 [Vega]
ICGC DataPortalENSG00000233816
TCGA cBioPortalIFNA13
AceView (NCBI)IFNA13
Genatlas (Paris)IFNA13
WikiGenes3447
SOURCE (Princeton)IFNA13
Genetics Home Reference (NIH)IFNA13
Genomic and cartography
GoldenPath hg38 (UCSC)IFNA13  -     chr9:21367372-21368076 -  9p21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)IFNA13  -     9p21.3   [Description]    (hg19-Feb_2009)
EnsemblIFNA13 - 9p21.3 [CytoView hg19]  IFNA13 - 9p21.3 [CytoView hg38]
Mapping of homologs : NCBIIFNA13 [Mapview hg19]  IFNA13 [Mapview hg38]
OMIM147578   
Gene and transcription
Genbank (Entrez)BC069427 BC093988 BC112002 HQ448423
RefSeq transcript (Entrez)NM_006900
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)IFNA13
Cluster EST : UnigeneHs.533471 [ NCBI ]
CGAP (NCI)Hs.533471
Alternative Splicing GalleryENSG00000233816
Gene ExpressionIFNA13 [ NCBI-GEO ]   IFNA13 [ EBI - ARRAY_EXPRESS ]   IFNA13 [ SEEK ]   IFNA13 [ MEM ]
Gene Expression Viewer (FireBrowse)IFNA13 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3447
GTEX Portal (Tissue expression)IFNA13
Protein : pattern, domain, 3D structure
UniProt/SwissProtP01562   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP01562  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP01562
Splice isoforms : SwissVarP01562
PhosPhoSitePlusP01562
Domaine pattern : Prosite (Expaxy)INTERFERON_A_B_D (PS00252)   
Domains : Interpro (EBI)4_helix_cytokine-like_core    4_helix_cytokine_core    Interferon_alpha/beta/delta   
Domain families : Pfam (Sanger)Interferon (PF00143)   
Domain families : Pfam (NCBI)pfam00143   
Domain families : Smart (EMBL)IFabd (SM00076)  
Conserved Domain (NCBI)IFNA13
DMDM Disease mutations3447
Blocks (Seattle)IFNA13
PDB (SRS)3UX9   
PDB (PDBSum)3UX9   
PDB (IMB)3UX9   
PDB (RSDB)3UX9   
Structural Biology KnowledgeBase3UX9   
SCOP (Structural Classification of Proteins)3UX9   
CATH (Classification of proteins structures)3UX9   
SuperfamilyP01562
Human Protein AtlasENSG00000233816
Peptide AtlasP01562
HPRD00964
Protein Interaction databases
DIP (DOE-UCLA)P01562
IntAct (EBI)P01562
FunCoupENSG00000233816
BioGRIDIFNA13
STRING (EMBL)IFNA13
ZODIACIFNA13
Ontologies - Pathways
QuickGOP01562
Ontology : AmiGOadaptive immune response  T cell activation involved in immune response  natural killer cell activation involved in immune response  cytokine activity  type I interferon receptor binding  extracellular region  extracellular space  humoral immune response  blood coagulation  cytokine-mediated signaling pathway  B cell differentiation  positive regulation of peptidyl-serine phosphorylation of STAT protein  B cell proliferation  response to exogenous dsRNA  innate immune response  defense response to virus  type I interferon signaling pathway  regulation of type I interferon-mediated signaling pathway  
Ontology : EGO-EBIadaptive immune response  T cell activation involved in immune response  natural killer cell activation involved in immune response  cytokine activity  type I interferon receptor binding  extracellular region  extracellular space  humoral immune response  blood coagulation  cytokine-mediated signaling pathway  B cell differentiation  positive regulation of peptidyl-serine phosphorylation of STAT protein  B cell proliferation  response to exogenous dsRNA  innate immune response  defense response to virus  type I interferon signaling pathway  regulation of type I interferon-mediated signaling pathway  
Pathways : KEGG   
NDEx NetworkIFNA13
Atlas of Cancer Signalling NetworkIFNA13
Wikipedia pathwaysIFNA13
Orthology - Evolution
OrthoDB3447
GeneTree (enSembl)ENSG00000233816
Phylogenetic Trees/Animal Genes : TreeFamIFNA13
HOVERGENP01562
HOGENOMP01562
Homologs : HomoloGeneIFNA13
Homology/Alignments : Family Browser (UCSC)IFNA13
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIFNA13 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IFNA13
dbVarIFNA13
ClinVarIFNA13
1000_GenomesIFNA13 
Exome Variant ServerIFNA13
ExAC (Exome Aggregation Consortium)IFNA13 (select the gene name)
Genetic variants : HAPMAP3447
Genomic Variants (DGV)IFNA13 [DGVbeta]
DECIPHERIFNA13 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisIFNA13 
Mutations
ICGC Data PortalIFNA13 
TCGA Data PortalIFNA13 
Broad Tumor PortalIFNA13
OASIS PortalIFNA13 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICIFNA13  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDIFNA13
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch IFNA13
DgiDB (Drug Gene Interaction Database)IFNA13
DoCM (Curated mutations)IFNA13 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IFNA13 (select a term)
intoGenIFNA13
Cancer3DIFNA13(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM147578   
Orphanet
MedgenIFNA13
Genetic Testing Registry IFNA13
NextProtP01562 [Medical]
TSGene3447
GENETestsIFNA13
Target ValidationIFNA13
Huge Navigator IFNA13 [HugePedia]
snp3D : Map Gene to Disease3447
BioCentury BCIQIFNA13
ClinGenIFNA13
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD3447
Chemical/Pharm GKB GenePA29658
Clinical trialIFNA13
Miscellaneous
canSAR (ICR)IFNA13 (select the gene name)
Probes
Litterature
PubMed73 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineIFNA13
EVEXIFNA13
GoPubMedIFNA13
iHOPIFNA13
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 17:03:41 CEST 2017

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