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IFNA14 (interferon alpha 14)

Identity

Alias_namesinterferon
Alias_symbol (synonym)LEIF2H
IFN-alphaH
Other alias
HGNC (Hugo) IFNA14
LocusID (NCBI) 3448
Atlas_Id 56012
Location 9p21.3  [Link to chromosome band 9p21]
Location_base_pair Starts at 21239202 and ends at 21239979 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)IFNA14   5420
Cards
Entrez_Gene (NCBI)IFNA14  3448  interferon alpha 14
AliasesIFN-alphaH; LEIF2H
GeneCards (Weizmann)IFNA14
Ensembl hg19 (Hinxton)ENSG00000228083 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000228083 [Gene_View]  chr9:21239202-21239979 [Contig_View]  IFNA14 [Vega]
ICGC DataPortalENSG00000228083
TCGA cBioPortalIFNA14
AceView (NCBI)IFNA14
Genatlas (Paris)IFNA14
WikiGenes3448
SOURCE (Princeton)IFNA14
Genetics Home Reference (NIH)IFNA14
Genomic and cartography
GoldenPath hg38 (UCSC)IFNA14  -     chr9:21239202-21239979 -  9p21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)IFNA14  -     9p21.3   [Description]    (hg19-Feb_2009)
EnsemblIFNA14 - 9p21.3 [CytoView hg19]  IFNA14 - 9p21.3 [CytoView hg38]
Mapping of homologs : NCBIIFNA14 [Mapview hg19]  IFNA14 [Mapview hg38]
OMIM147579   
Gene and transcription
Genbank (Entrez)BC074956 BC104159 BC104160 V00542
RefSeq transcript (Entrez)NM_002172
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)IFNA14
Cluster EST : UnigeneHs.93907 [ NCBI ]
CGAP (NCI)Hs.93907
Alternative Splicing GalleryENSG00000228083
Gene ExpressionIFNA14 [ NCBI-GEO ]   IFNA14 [ EBI - ARRAY_EXPRESS ]   IFNA14 [ SEEK ]   IFNA14 [ MEM ]
Gene Expression Viewer (FireBrowse)IFNA14 [ Ni2ebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3448
GTEX Portal (Tissue expression)IFNA14
Protein : pattern, domain, 3D structure
UniProt/SwissProtP01570   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP01570  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP01570
Splice isoforms : SwissVarP01570
PhosPhoSitePlusP01570
Domaine pattern : Prosite (Expaxy)INTERFERON_A_B_D (PS00252)   
Domains : Interpro (EBI)4_helix_cytokine-like_core    4_helix_cytokine_core    Interferon_alpha/beta/delta   
Domain families : Pfam (Sanger)Interferon (PF00143)   
Domain families : Pfam (NCBI)pfam00143   
Domain families : Smart (EMBL)IFabd (SM00076)  
Conserved Domain (NCBI)IFNA14
DMDM Disease mutations3448
Blocks (Seattle)IFNA14
SuperfamilyP01570
Human Protein AtlasENSG00000228083
Peptide AtlasP01570
HPRD00965
IPIIPI00003086   
Protein Interaction databases
DIP (DOE-UCLA)P01570
IntAct (EBI)P01570
FunCoupENSG00000228083
BioGRIDIFNA14
STRING (EMBL)IFNA14
ZODIACIFNA14
Ontologies - Pathways
QuickGOP01570
Ontology : AmiGOadaptive immune response  T cell activation involved in immune response  natural killer cell activation involved in immune response  cytokine activity  cytokine receptor binding  type I interferon receptor binding  extracellular region  extracellular space  humoral immune response  blood coagulation  cytokine-mediated signaling pathway  B cell differentiation  positive regulation of peptidyl-serine phosphorylation of STAT protein  B cell proliferation  response to exogenous dsRNA  innate immune response  defense response to virus  type I interferon signaling pathway  regulation of type I interferon-mediated signaling pathway  
Ontology : EGO-EBIadaptive immune response  T cell activation involved in immune response  natural killer cell activation involved in immune response  cytokine activity  cytokine receptor binding  type I interferon receptor binding  extracellular region  extracellular space  humoral immune response  blood coagulation  cytokine-mediated signaling pathway  B cell differentiation  positive regulation of peptidyl-serine phosphorylation of STAT protein  B cell proliferation  response to exogenous dsRNA  innate immune response  defense response to virus  type I interferon signaling pathway  regulation of type I interferon-mediated signaling pathway  
Pathways : KEGG   
NDEx NetworkIFNA14
Atlas of Cancer Signalling NetworkIFNA14
Wikipedia pathwaysIFNA14
Orthology - Evolution
OrthoDB3448
GeneTree (enSembl)ENSG00000228083
Phylogenetic Trees/Animal Genes : TreeFamIFNA14
HOVERGENP01570
HOGENOMP01570
Homologs : HomoloGeneIFNA14
Homology/Alignments : Family Browser (UCSC)IFNA14
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIFNA14 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IFNA14
dbVarIFNA14
ClinVarIFNA14
1000_GenomesIFNA14 
Exome Variant ServerIFNA14
ExAC (Exome Aggregation Consortium)IFNA14 (select the gene name)
Genetic variants : HAPMAP3448
Genomic Variants (DGV)IFNA14 [DGVbeta]
DECIPHERIFNA14 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisIFNA14 
Mutations
ICGC Data PortalIFNA14 
TCGA Data PortalIFNA14 
Broad Tumor PortalIFNA14
OASIS PortalIFNA14 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICIFNA14  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDIFNA14
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch IFNA14
DgiDB (Drug Gene Interaction Database)IFNA14
DoCM (Curated mutations)IFNA14 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IFNA14 (select a term)
intoGenIFNA14
Cancer3DIFNA14(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM147579   
Orphanet
MedgenIFNA14
Genetic Testing Registry IFNA14
NextProtP01570 [Medical]
TSGene3448
GENETestsIFNA14
Target ValidationIFNA14
Huge Navigator IFNA14 [HugePedia]
snp3D : Map Gene to Disease3448
BioCentury BCIQIFNA14
ClinGenIFNA14
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD3448
Chemical/Pharm GKB GenePA29659
Clinical trialIFNA14
Miscellaneous
canSAR (ICR)IFNA14 (select the gene name)
Probes
Litterature
PubMed67 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineIFNA14
EVEXIFNA14
GoPubMedIFNA14
iHOPIFNA14
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:12:46 CEST 2017

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