Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

IFNA16 (interferon alpha 16)

Identity

Alias_symbol (synonym)IFN-alphaO
Other aliasIFN-alpha-16
HGNC (Hugo) IFNA16
LocusID (NCBI) 3449
Atlas_Id 56380
Location 9p21.3  [Link to chromosome band 9p21]
Location_base_pair Starts at 21216373 and ends at 21217311 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)IFNA16   5421
Cards
Entrez_Gene (NCBI)IFNA16  3449  interferon alpha 16
AliasesIFN-alpha-16; IFN-alphaO
GeneCards (Weizmann)IFNA16
Ensembl hg19 (Hinxton)ENSG00000147885 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000147885 [Gene_View]  chr9:21216373-21217311 [Contig_View]  IFNA16 [Vega]
ICGC DataPortalENSG00000147885
TCGA cBioPortalIFNA16
AceView (NCBI)IFNA16
Genatlas (Paris)IFNA16
WikiGenes3449
SOURCE (Princeton)IFNA16
Genetics Home Reference (NIH)IFNA16
Genomic and cartography
GoldenPath hg38 (UCSC)IFNA16  -     chr9:21216373-21217311 -  9p21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)IFNA16  -     9p21.3   [Description]    (hg19-Feb_2009)
EnsemblIFNA16 - 9p21.3 [CytoView hg19]  IFNA16 - 9p21.3 [CytoView hg38]
Mapping of homologs : NCBIIFNA16 [Mapview hg19]  IFNA16 [Mapview hg38]
OMIM147580   
Gene and transcription
Genbank (Entrez)BC140290 BC146500 M28585 X00140
RefSeq transcript (Entrez)NM_002173
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)IFNA16
Cluster EST : UnigeneHs.56303 [ NCBI ]
CGAP (NCI)Hs.56303
Alternative Splicing GalleryENSG00000147885
Gene ExpressionIFNA16 [ NCBI-GEO ]   IFNA16 [ EBI - ARRAY_EXPRESS ]   IFNA16 [ SEEK ]   IFNA16 [ MEM ]
Gene Expression Viewer (FireBrowse)IFNA16 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3449
GTEX Portal (Tissue expression)IFNA16
Protein : pattern, domain, 3D structure
UniProt/SwissProtP05015   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP05015  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP05015
Splice isoforms : SwissVarP05015
PhosPhoSitePlusP05015
Domaine pattern : Prosite (Expaxy)INTERFERON_A_B_D (PS00252)   
Domains : Interpro (EBI)4_helix_cytokine-like_core    4_helix_cytokine_core    Interferon_alpha/beta/delta   
Domain families : Pfam (Sanger)Interferon (PF00143)   
Domain families : Pfam (NCBI)pfam00143   
Domain families : Smart (EMBL)IFabd (SM00076)  
Conserved Domain (NCBI)IFNA16
DMDM Disease mutations3449
Blocks (Seattle)IFNA16
SuperfamilyP05015
Human Protein AtlasENSG00000147885
Peptide AtlasP05015
HPRD00966
IPIIPI00006456   
Protein Interaction databases
DIP (DOE-UCLA)P05015
IntAct (EBI)P05015
FunCoupENSG00000147885
BioGRIDIFNA16
STRING (EMBL)IFNA16
ZODIACIFNA16
Ontologies - Pathways
QuickGOP05015
Ontology : AmiGOadaptive immune response  T cell activation involved in immune response  natural killer cell activation involved in immune response  cytokine activity  type I interferon receptor binding  extracellular region  extracellular space  humoral immune response  blood coagulation  cytokine-mediated signaling pathway  B cell differentiation  positive regulation of peptidyl-serine phosphorylation of STAT protein  B cell proliferation  response to exogenous dsRNA  innate immune response  defense response to virus  type I interferon signaling pathway  regulation of type I interferon-mediated signaling pathway  
Ontology : EGO-EBIadaptive immune response  T cell activation involved in immune response  natural killer cell activation involved in immune response  cytokine activity  type I interferon receptor binding  extracellular region  extracellular space  humoral immune response  blood coagulation  cytokine-mediated signaling pathway  B cell differentiation  positive regulation of peptidyl-serine phosphorylation of STAT protein  B cell proliferation  response to exogenous dsRNA  innate immune response  defense response to virus  type I interferon signaling pathway  regulation of type I interferon-mediated signaling pathway  
Pathways : KEGG   
NDEx NetworkIFNA16
Atlas of Cancer Signalling NetworkIFNA16
Wikipedia pathwaysIFNA16
Orthology - Evolution
OrthoDB3449
GeneTree (enSembl)ENSG00000147885
Phylogenetic Trees/Animal Genes : TreeFamIFNA16
HOVERGENP05015
HOGENOMP05015
Homologs : HomoloGeneIFNA16
Homology/Alignments : Family Browser (UCSC)IFNA16
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIFNA16 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IFNA16
dbVarIFNA16
ClinVarIFNA16
1000_GenomesIFNA16 
Exome Variant ServerIFNA16
ExAC (Exome Aggregation Consortium)IFNA16 (select the gene name)
Genetic variants : HAPMAP3449
Genomic Variants (DGV)IFNA16 [DGVbeta]
DECIPHERIFNA16 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisIFNA16 
Mutations
ICGC Data PortalIFNA16 
TCGA Data PortalIFNA16 
Broad Tumor PortalIFNA16
OASIS PortalIFNA16 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICIFNA16  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDIFNA16
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch IFNA16
DgiDB (Drug Gene Interaction Database)IFNA16
DoCM (Curated mutations)IFNA16 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IFNA16 (select a term)
intoGenIFNA16
Cancer3DIFNA16(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM147580   
Orphanet
MedgenIFNA16
Genetic Testing Registry IFNA16
NextProtP05015 [Medical]
TSGene3449
GENETestsIFNA16
Target ValidationIFNA16
Huge Navigator IFNA16 [HugePedia]
snp3D : Map Gene to Disease3449
BioCentury BCIQIFNA16
ClinGenIFNA16
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD3449
Chemical/Pharm GKB GenePA29660
Clinical trialIFNA16
Miscellaneous
canSAR (ICR)IFNA16 (select the gene name)
Probes
Litterature
PubMed57 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineIFNA16
EVEXIFNA16
GoPubMedIFNA16
iHOPIFNA16
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 25 19:12:46 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.