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IFNA17 (interferon alpha 17)

Identity

Alias_symbol (synonym)LEIF2C1
IFN-alphaI
Other aliasIFNA
INFA
HGNC (Hugo) IFNA17
LocusID (NCBI) 3451
Atlas_Id 43773
Location 9p21.3  [Link to chromosome band 9p21]
Location_base_pair Starts at 21227243 and ends at 21228222 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)IFNA17   5422
Cards
Entrez_Gene (NCBI)IFNA17  3451  interferon alpha 17
AliasesIFN-alphaI; IFNA; INFA; LEIF2C1
GeneCards (Weizmann)IFNA17
Ensembl hg19 (Hinxton)ENSG00000234829 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000234829 [Gene_View]  ENSG00000234829 [Sequence]  chr9:21227243-21228222 [Contig_View]  IFNA17 [Vega]
ICGC DataPortalENSG00000234829
TCGA cBioPortalIFNA17
AceView (NCBI)IFNA17
Genatlas (Paris)IFNA17
WikiGenes3451
SOURCE (Princeton)IFNA17
Genetics Home Reference (NIH)IFNA17
Genomic and cartography
GoldenPath hg38 (UCSC)IFNA17  -     chr9:21227243-21228222 -  9p21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)IFNA17  -     9p21.3   [Description]    (hg19-Feb_2009)
EnsemblIFNA17 - 9p21.3 [CytoView hg19]  IFNA17 - 9p21.3 [CytoView hg38]
Mapping of homologs : NCBIIFNA17 [Mapview hg19]  IFNA17 [Mapview hg38]
OMIM147583   
Gene and transcription
Genbank (Entrez)BC096732 BC098355 M11026 M38289 M71246
RefSeq transcript (Entrez)NM_021268
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)IFNA17
Cluster EST : UnigeneHs.282276 [ NCBI ]
CGAP (NCI)Hs.282276
Alternative Splicing GalleryENSG00000234829
Gene ExpressionIFNA17 [ NCBI-GEO ]   IFNA17 [ EBI - ARRAY_EXPRESS ]   IFNA17 [ SEEK ]   IFNA17 [ MEM ]
Gene Expression Viewer (FireBrowse)IFNA17 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3451
GTEX Portal (Tissue expression)IFNA17
Human Protein AtlasENSG00000234829-IFNA17 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP01571   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP01571  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP01571
Splice isoforms : SwissVarP01571
PhosPhoSitePlusP01571
Domaine pattern : Prosite (Expaxy)INTERFERON_A_B_D (PS00252)   
Domains : Interpro (EBI)4_helix_cytokine-like_core    Interferon_alpha/beta/delta   
Domain families : Pfam (Sanger)Interferon (PF00143)   
Domain families : Pfam (NCBI)pfam00143   
Domain families : Smart (EMBL)IFabd (SM00076)  
Conserved Domain (NCBI)IFNA17
DMDM Disease mutations3451
Blocks (Seattle)IFNA17
SuperfamilyP01571
Human Protein Atlas [tissue]ENSG00000234829-IFNA17 [tissue]
Peptide AtlasP01571
HPRD00967
IPIIPI00003087   
Protein Interaction databases
DIP (DOE-UCLA)P01571
IntAct (EBI)P01571
FunCoupENSG00000234829
BioGRIDIFNA17
STRING (EMBL)IFNA17
ZODIACIFNA17
Ontologies - Pathways
QuickGOP01571
Ontology : AmiGOadaptive immune response  T cell activation involved in immune response  natural killer cell activation involved in immune response  cytokine activity  type I interferon receptor binding  type I interferon receptor binding  extracellular region  extracellular space  humoral immune response  blood coagulation  response to virus  regulation of signaling receptor activity  cytokine-mediated signaling pathway  B cell differentiation  positive regulation of peptidyl-serine phosphorylation of STAT protein  B cell proliferation  response to exogenous dsRNA  defense response to virus  type I interferon signaling pathway  
Ontology : EGO-EBIadaptive immune response  T cell activation involved in immune response  natural killer cell activation involved in immune response  cytokine activity  type I interferon receptor binding  type I interferon receptor binding  extracellular region  extracellular space  humoral immune response  blood coagulation  response to virus  regulation of signaling receptor activity  cytokine-mediated signaling pathway  B cell differentiation  positive regulation of peptidyl-serine phosphorylation of STAT protein  B cell proliferation  response to exogenous dsRNA  defense response to virus  type I interferon signaling pathway  
Pathways : KEGG   
NDEx NetworkIFNA17
Atlas of Cancer Signalling NetworkIFNA17
Wikipedia pathwaysIFNA17
Orthology - Evolution
OrthoDB3451
GeneTree (enSembl)ENSG00000234829
Phylogenetic Trees/Animal Genes : TreeFamIFNA17
HOVERGENP01571
HOGENOMP01571
Homologs : HomoloGeneIFNA17
Homology/Alignments : Family Browser (UCSC)IFNA17
Gene fusions - Rearrangements
Fusion : QuiverIFNA17
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIFNA17 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IFNA17
dbVarIFNA17
ClinVarIFNA17
1000_GenomesIFNA17 
Exome Variant ServerIFNA17
ExAC (Exome Aggregation Consortium)ENSG00000234829
GNOMAD BrowserENSG00000234829
Varsome BrowserIFNA17
Genetic variants : HAPMAP3451
Genomic Variants (DGV)IFNA17 [DGVbeta]
DECIPHERIFNA17 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisIFNA17 
Mutations
ICGC Data PortalIFNA17 
TCGA Data PortalIFNA17 
Broad Tumor PortalIFNA17
OASIS PortalIFNA17 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICIFNA17  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDIFNA17
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch IFNA17
DgiDB (Drug Gene Interaction Database)IFNA17
DoCM (Curated mutations)IFNA17 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IFNA17 (select a term)
intoGenIFNA17
Cancer3DIFNA17(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM147583   
Orphanet
DisGeNETIFNA17
MedgenIFNA17
Genetic Testing Registry IFNA17
NextProtP01571 [Medical]
TSGene3451
GENETestsIFNA17
Target ValidationIFNA17
Huge Navigator IFNA17 [HugePedia]
snp3D : Map Gene to Disease3451
BioCentury BCIQIFNA17
ClinGenIFNA17
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD3451
Chemical/Pharm GKB GenePA29661
Clinical trialIFNA17
Miscellaneous
canSAR (ICR)IFNA17 (select the gene name)
Probes
Litterature
PubMed73 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineIFNA17
EVEXIFNA17
GoPubMedIFNA17
iHOPIFNA17
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Aug 27 11:28:28 CEST 2018

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