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IFNA6 (interferon alpha 6)

Identity

Alias_namesinterferon
Alias_symbol (synonym)IFN-alphaK
Other alias
HGNC (Hugo) IFNA6
LocusID (NCBI) 3443
Atlas_Id 56159
Location 9p21.3  [Link to chromosome band 9p21]
Location_base_pair Starts at 21350318 and ends at 21350887 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)IFNA6   5427
Cards
Entrez_Gene (NCBI)IFNA6  3443  interferon alpha 6
AliasesIFN-alphaK
GeneCards (Weizmann)IFNA6
Ensembl hg19 (Hinxton)ENSG00000120235 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000120235 [Gene_View]  chr9:21350318-21350887 [Contig_View]  IFNA6 [Vega]
ICGC DataPortalENSG00000120235
TCGA cBioPortalIFNA6
AceView (NCBI)IFNA6
Genatlas (Paris)IFNA6
WikiGenes3443
SOURCE (Princeton)IFNA6
Genetics Home Reference (NIH)IFNA6
Genomic and cartography
GoldenPath hg38 (UCSC)IFNA6  -     chr9:21350318-21350887 -  9p21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)IFNA6  -     9p21.3   [Description]    (hg19-Feb_2009)
EnsemblIFNA6 - 9p21.3 [CytoView hg19]  IFNA6 - 9p21.3 [CytoView hg38]
Mapping of homologs : NCBIIFNA6 [Mapview hg19]  IFNA6 [Mapview hg38]
OMIM147566   
Gene and transcription
Genbank (Entrez)BC069471 BC096697 BC096710 BC096730 BC098357
RefSeq transcript (Entrez)NM_021002
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)IFNA6
Cluster EST : UnigeneHs.533470 [ NCBI ]
CGAP (NCI)Hs.533470
Alternative Splicing GalleryENSG00000120235
Gene ExpressionIFNA6 [ NCBI-GEO ]   IFNA6 [ EBI - ARRAY_EXPRESS ]   IFNA6 [ SEEK ]   IFNA6 [ MEM ]
Gene Expression Viewer (FireBrowse)IFNA6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3443
GTEX Portal (Tissue expression)IFNA6
Protein : pattern, domain, 3D structure
UniProt/SwissProtP05013   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP05013  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP05013
Splice isoforms : SwissVarP05013
PhosPhoSitePlusP05013
Domaine pattern : Prosite (Expaxy)INTERFERON_A_B_D (PS00252)   
Domains : Interpro (EBI)4_helix_cytokine-like_core    4_helix_cytokine_core    Interferon_alpha/beta/delta   
Domain families : Pfam (Sanger)Interferon (PF00143)   
Domain families : Pfam (NCBI)pfam00143   
Domain families : Smart (EMBL)IFabd (SM00076)  
Conserved Domain (NCBI)IFNA6
DMDM Disease mutations3443
Blocks (Seattle)IFNA6
SuperfamilyP05013
Human Protein AtlasENSG00000120235
Peptide AtlasP05013
HPRD00954
IPIIPI00006454   
Protein Interaction databases
DIP (DOE-UCLA)P05013
IntAct (EBI)P05013
FunCoupENSG00000120235
BioGRIDIFNA6
STRING (EMBL)IFNA6
ZODIACIFNA6
Ontologies - Pathways
QuickGOP05013
Ontology : AmiGOadaptive immune response  T cell activation involved in immune response  natural killer cell activation involved in immune response  cytokine activity  type I interferon receptor binding  cellular_component  extracellular region  extracellular space  humoral immune response  blood coagulation  cytokine-mediated signaling pathway  B cell differentiation  positive regulation of peptidyl-serine phosphorylation of STAT protein  B cell proliferation  response to exogenous dsRNA  innate immune response  defense response to virus  type I interferon signaling pathway  regulation of type I interferon-mediated signaling pathway  
Ontology : EGO-EBIadaptive immune response  T cell activation involved in immune response  natural killer cell activation involved in immune response  cytokine activity  type I interferon receptor binding  cellular_component  extracellular region  extracellular space  humoral immune response  blood coagulation  cytokine-mediated signaling pathway  B cell differentiation  positive regulation of peptidyl-serine phosphorylation of STAT protein  B cell proliferation  response to exogenous dsRNA  innate immune response  defense response to virus  type I interferon signaling pathway  regulation of type I interferon-mediated signaling pathway  
Pathways : KEGG   
NDEx NetworkIFNA6
Atlas of Cancer Signalling NetworkIFNA6
Wikipedia pathwaysIFNA6
Orthology - Evolution
OrthoDB3443
GeneTree (enSembl)ENSG00000120235
Phylogenetic Trees/Animal Genes : TreeFamIFNA6
HOVERGENP05013
HOGENOMP05013
Homologs : HomoloGeneIFNA6
Homology/Alignments : Family Browser (UCSC)IFNA6
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIFNA6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IFNA6
dbVarIFNA6
ClinVarIFNA6
1000_GenomesIFNA6 
Exome Variant ServerIFNA6
ExAC (Exome Aggregation Consortium)IFNA6 (select the gene name)
Genetic variants : HAPMAP3443
Genomic Variants (DGV)IFNA6 [DGVbeta]
DECIPHERIFNA6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisIFNA6 
Mutations
ICGC Data PortalIFNA6 
TCGA Data PortalIFNA6 
Broad Tumor PortalIFNA6
OASIS PortalIFNA6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICIFNA6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDIFNA6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch IFNA6
DgiDB (Drug Gene Interaction Database)IFNA6
DoCM (Curated mutations)IFNA6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IFNA6 (select a term)
intoGenIFNA6
Cancer3DIFNA6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM147566   
Orphanet
MedgenIFNA6
Genetic Testing Registry IFNA6
NextProtP05013 [Medical]
TSGene3443
GENETestsIĆNA2
Target ValidationIFNA6
Huge Navigator IFNA6 [HugePedia]
snp3D : Map Gene to Disease3443
BioCentury BCIQIFNA6
ClinGenIFNA6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD3443
Chemical/Pharm GKB GenePA29666
Clinical trialIFNA6
Miscellaneous
canSAR (ICR)IFNA6 (select the gene name)
Probes
Litterature
PubMed65 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineIFNA6
EVEXIFNA6
GoPubMedIFNA6
iHOPIFNA6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:12:47 CEST 2017

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