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IFNA7 (interferon alpha 7)

Identity

Alias_symbol (synonym)IFNA-J
IFN-alphaJ
Other alias
HGNC (Hugo) IFNA7
LocusID (NCBI) 3444
Atlas_Id 56481
Location 9p21.3  [Link to chromosome band 9p21]
Location_base_pair Starts at 21201469 and ends at 21202205 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)IFNA7   5428
Cards
Entrez_Gene (NCBI)IFNA7  3444  interferon alpha 7
AliasesIFN-alphaJ; IFNA-J
GeneCards (Weizmann)IFNA7
Ensembl hg19 (Hinxton)ENSG00000214042 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000214042 [Gene_View]  chr9:21201469-21202205 [Contig_View]  IFNA7 [Vega]
ICGC DataPortalENSG00000214042
TCGA cBioPortalIFNA7
AceView (NCBI)IFNA7
Genatlas (Paris)IFNA7
WikiGenes3444
SOURCE (Princeton)IFNA7
Genetics Home Reference (NIH)IFNA7
Genomic and cartography
GoldenPath hg38 (UCSC)IFNA7  -     chr9:21201469-21202205 -  9p21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)IFNA7  -     9p21.3   [Description]    (hg19-Feb_2009)
EnsemblIFNA7 - 9p21.3 [CytoView hg19]  IFNA7 - 9p21.3 [CytoView hg38]
Mapping of homologs : NCBIIFNA7 [Mapview hg19]  IFNA7 [Mapview hg38]
OMIM147567   
Gene and transcription
Genbank (Entrez)BC074991 BC074992 BC113994 BC114000 M34913
RefSeq transcript (Entrez)NM_021057
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)IFNA7
Cluster EST : UnigeneHs.282274 [ NCBI ]
CGAP (NCI)Hs.282274
Alternative Splicing GalleryENSG00000214042
Gene ExpressionIFNA7 [ NCBI-GEO ]   IFNA7 [ EBI - ARRAY_EXPRESS ]   IFNA7 [ SEEK ]   IFNA7 [ MEM ]
Gene Expression Viewer (FireBrowse)IFNA7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3444
GTEX Portal (Tissue expression)IFNA7
Protein : pattern, domain, 3D structure
UniProt/SwissProtP01567   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP01567  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP01567
Splice isoforms : SwissVarP01567
PhosPhoSitePlusP01567
Domaine pattern : Prosite (Expaxy)INTERFERON_A_B_D (PS00252)   
Domains : Interpro (EBI)4_helix_cytokine-like_core    4_helix_cytokine_core    Interferon_alpha/beta/delta   
Domain families : Pfam (Sanger)Interferon (PF00143)   
Domain families : Pfam (NCBI)pfam00143   
Domain families : Smart (EMBL)IFabd (SM00076)  
Conserved Domain (NCBI)IFNA7
DMDM Disease mutations3444
Blocks (Seattle)IFNA7
SuperfamilyP01567
Human Protein AtlasENSG00000214042
Peptide AtlasP01567
HPRD08857
IPIIPI00003075   
Protein Interaction databases
DIP (DOE-UCLA)P01567
IntAct (EBI)P01567
FunCoupENSG00000214042
BioGRIDIFNA7
STRING (EMBL)IFNA7
ZODIACIFNA7
Ontologies - Pathways
QuickGOP01567
Ontology : AmiGOadaptive immune response  T cell activation involved in immune response  natural killer cell activation involved in immune response  cytokine activity  type I interferon receptor binding  extracellular region  extracellular space  humoral immune response  cell-cell signaling  blood coagulation  response to virus  cytokine-mediated signaling pathway  B cell differentiation  positive regulation of peptidyl-serine phosphorylation of STAT protein  B cell proliferation  response to exogenous dsRNA  innate immune response  defense response to virus  type I interferon signaling pathway  regulation of type I interferon-mediated signaling pathway  
Ontology : EGO-EBIadaptive immune response  T cell activation involved in immune response  natural killer cell activation involved in immune response  cytokine activity  type I interferon receptor binding  extracellular region  extracellular space  humoral immune response  cell-cell signaling  blood coagulation  response to virus  cytokine-mediated signaling pathway  B cell differentiation  positive regulation of peptidyl-serine phosphorylation of STAT protein  B cell proliferation  response to exogenous dsRNA  innate immune response  defense response to virus  type I interferon signaling pathway  regulation of type I interferon-mediated signaling pathway  
Pathways : KEGG   
NDEx NetworkIFNA7
Atlas of Cancer Signalling NetworkIFNA7
Wikipedia pathwaysIFNA7
Orthology - Evolution
OrthoDB3444
GeneTree (enSembl)ENSG00000214042
Phylogenetic Trees/Animal Genes : TreeFamIFNA7
HOVERGENP01567
HOGENOMP01567
Homologs : HomoloGeneIFNA7
Homology/Alignments : Family Browser (UCSC)IFNA7
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIFNA7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IFNA7
dbVarIFNA7
ClinVarIFNA7
1000_GenomesIFNA7 
Exome Variant ServerIFNA7
ExAC (Exome Aggregation Consortium)IFNA7 (select the gene name)
Genetic variants : HAPMAP3444
Genomic Variants (DGV)IFNA7 [DGVbeta]
DECIPHERIFNA7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisIFNA7 
Mutations
ICGC Data PortalIFNA7 
TCGA Data PortalIFNA7 
Broad Tumor PortalIFNA7
OASIS PortalIFNA7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICIFNA7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDIFNA7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch IFNA7
DgiDB (Drug Gene Interaction Database)IFNA7
DoCM (Curated mutations)IFNA7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IFNA7 (select a term)
intoGenIFNA7
Cancer3DIFNA7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM147567   
Orphanet
MedgenIFNA7
Genetic Testing Registry IFNA7
NextProtP01567 [Medical]
TSGene3444
GENETestsIFNA7
Target ValidationIFNA7
Huge Navigator IFNA7 [HugePedia]
snp3D : Map Gene to Disease3444
BioCentury BCIQIFNA7
ClinGenIFNA7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD3444
Chemical/Pharm GKB GenePA29667
Clinical trialIFNA7
Miscellaneous
canSAR (ICR)IFNA7 (select the gene name)
Probes
Litterature
PubMed59 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineIFNA7
EVEXIFNA7
GoPubMedIFNA7
iHOPIFNA7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:12:47 CEST 2017

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