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IFNE (interferon epsilon)

Identity

Alias_symbol (synonym)IFNE1
Other aliasIFN-E
IFNT1
INFE1
PRO655
HGNC (Hugo) IFNE
LocusID (NCBI) 338376
Atlas_Id 55988
Location 9p21.3  [Link to chromosome band 9p21]
Location_base_pair Starts at 21480840 and ends at 21482313 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)IFNE   18163
Cards
Entrez_Gene (NCBI)IFNE  338376  interferon epsilon
AliasesIFN-E; IFNE1; IFNT1; INFE1; 
PRO655
GeneCards (Weizmann)IFNE
Ensembl hg19 (Hinxton)ENSG00000184995 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000184995 [Gene_View]  chr9:21480840-21482313 [Contig_View]  IFNE [Vega]
ICGC DataPortalENSG00000184995
TCGA cBioPortalIFNE
AceView (NCBI)IFNE
Genatlas (Paris)IFNE
WikiGenes338376
SOURCE (Princeton)IFNE
Genetics Home Reference (NIH)IFNE
Genomic and cartography
GoldenPath hg38 (UCSC)IFNE  -     chr9:21480840-21482313 -  9p21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)IFNE  -     9p21.3   [Description]    (hg19-Feb_2009)
EnsemblIFNE - 9p21.3 [CytoView hg19]  IFNE - 9p21.3 [CytoView hg38]
Mapping of homologs : NCBIIFNE [Mapview hg19]  IFNE [Mapview hg38]
OMIM615223   
Gene and transcription
Genbank (Entrez)AY190045 AY358570 BC100871 BC100872 BC100873
RefSeq transcript (Entrez)NM_176891
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)IFNE
Cluster EST : UnigeneHs.682604 [ NCBI ]
CGAP (NCI)Hs.682604
Alternative Splicing GalleryENSG00000184995
Gene ExpressionIFNE [ NCBI-GEO ]   IFNE [ EBI - ARRAY_EXPRESS ]   IFNE [ SEEK ]   IFNE [ MEM ]
Gene Expression Viewer (FireBrowse)IFNE [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)338376
GTEX Portal (Tissue expression)IFNE
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86WN2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86WN2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86WN2
Splice isoforms : SwissVarQ86WN2
PhosPhoSitePlusQ86WN2
Domaine pattern : Prosite (Expaxy)INTERFERON_A_B_D (PS00252)   
Domains : Interpro (EBI)4_helix_cytokine-like_core    4_helix_cytokine_core    Interferon_alpha/beta/delta   
Domain families : Pfam (Sanger)Interferon (PF00143)   
Domain families : Pfam (NCBI)pfam00143   
Domain families : Smart (EMBL)IFabd (SM00076)  
Conserved Domain (NCBI)IFNE
DMDM Disease mutations338376
Blocks (Seattle)IFNE
SuperfamilyQ86WN2
Human Protein AtlasENSG00000184995
Peptide AtlasQ86WN2
HPRD17132
IPIIPI00329100   
Protein Interaction databases
DIP (DOE-UCLA)Q86WN2
IntAct (EBI)Q86WN2
FunCoupENSG00000184995
BioGRIDIFNE
STRING (EMBL)IFNE
ZODIACIFNE
Ontologies - Pathways
QuickGOQ86WN2
Ontology : AmiGOadaptive immune response  T cell activation involved in immune response  natural killer cell activation involved in immune response  cytokine activity  type I interferon receptor binding  extracellular space  humoral immune response  cytokine-mediated signaling pathway  B cell differentiation  positive regulation of peptidyl-serine phosphorylation of STAT protein  B cell proliferation  defense response to bacterium  response to exogenous dsRNA  innate immune response  defense response to virus  
Ontology : EGO-EBIadaptive immune response  T cell activation involved in immune response  natural killer cell activation involved in immune response  cytokine activity  type I interferon receptor binding  extracellular space  humoral immune response  cytokine-mediated signaling pathway  B cell differentiation  positive regulation of peptidyl-serine phosphorylation of STAT protein  B cell proliferation  defense response to bacterium  response to exogenous dsRNA  innate immune response  defense response to virus  
Pathways : KEGGCytokine-cytokine receptor interaction    RIG-I-like receptor signaling pathway    Jak-STAT signaling pathway   
NDEx NetworkIFNE
Atlas of Cancer Signalling NetworkIFNE
Wikipedia pathwaysIFNE
Orthology - Evolution
OrthoDB338376
GeneTree (enSembl)ENSG00000184995
Phylogenetic Trees/Animal Genes : TreeFamIFNE
HOVERGENQ86WN2
HOGENOMQ86WN2
Homologs : HomoloGeneIFNE
Homology/Alignments : Family Browser (UCSC)IFNE
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIFNE [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IFNE
dbVarIFNE
ClinVarIFNE
1000_GenomesIFNE 
Exome Variant ServerIFNE
ExAC (Exome Aggregation Consortium)IFNE (select the gene name)
Genetic variants : HAPMAP338376
Genomic Variants (DGV)IFNE [DGVbeta]
DECIPHERIFNE [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisIFNE 
Mutations
ICGC Data PortalIFNE 
TCGA Data PortalIFNE 
Broad Tumor PortalIFNE
OASIS PortalIFNE [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICIFNE  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDIFNE
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch IFNE
DgiDB (Drug Gene Interaction Database)IFNE
DoCM (Curated mutations)IFNE (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IFNE (select a term)
intoGenIFNE
Cancer3DIFNE(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615223   
Orphanet
MedgenIFNE
Genetic Testing Registry IFNE
NextProtQ86WN2 [Medical]
TSGene338376
GENETestsIFNE
Target ValidationIFNE
Huge Navigator IFNE [HugePedia]
snp3D : Map Gene to Disease338376
BioCentury BCIQIFNE
ClinGenIFNE
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD338376
Chemical/Pharm GKB GenePA164720874
Clinical trialIFNE
Miscellaneous
canSAR (ICR)IFNE (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineIFNE
EVEXIFNE
GoPubMedIFNE
iHOPIFNE
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:12:48 CEST 2017

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