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IFNW1 (interferon omega 1)

Identity

Alias_namesinterferon omega-1
Other alias-
HGNC (Hugo) IFNW1
LocusID (NCBI) 3467
Atlas_Id 56139
Location 9p21.3  [Link to chromosome band 9p21]
Location_base_pair Starts at 21140632 and ends at 21141901 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)IFNW1   5448
Cards
Entrez_Gene (NCBI)IFNW1  3467  interferon omega 1
Aliases
GeneCards (Weizmann)IFNW1
Ensembl hg19 (Hinxton)ENSG00000177047 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000177047 [Gene_View]  chr9:21140632-21141901 [Contig_View]  IFNW1 [Vega]
ICGC DataPortalENSG00000177047
TCGA cBioPortalIFNW1
AceView (NCBI)IFNW1
Genatlas (Paris)IFNW1
WikiGenes3467
SOURCE (Princeton)IFNW1
Genetics Home Reference (NIH)IFNW1
Genomic and cartography
GoldenPath hg38 (UCSC)IFNW1  -     chr9:21140632-21141901 -  9p21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)IFNW1  -     9p21.3   [Description]    (hg19-Feb_2009)
EnsemblIFNW1 - 9p21.3 [CytoView hg19]  IFNW1 - 9p21.3 [CytoView hg38]
Mapping of homologs : NCBIIFNW1 [Mapview hg19]  IFNW1 [Mapview hg38]
OMIM147553   
Gene and transcription
Genbank (Entrez)A12140 AI860608 AY780805 BC069095 BC117290
RefSeq transcript (Entrez)NM_002177
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)IFNW1
Cluster EST : UnigeneHs.73010 [ NCBI ]
CGAP (NCI)Hs.73010
Alternative Splicing GalleryENSG00000177047
Gene ExpressionIFNW1 [ NCBI-GEO ]   IFNW1 [ EBI - ARRAY_EXPRESS ]   IFNW1 [ SEEK ]   IFNW1 [ MEM ]
Gene Expression Viewer (FireBrowse)IFNW1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3467
GTEX Portal (Tissue expression)IFNW1
Protein : pattern, domain, 3D structure
UniProt/SwissProtP05000   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP05000  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP05000
Splice isoforms : SwissVarP05000
PhosPhoSitePlusP05000
Domaine pattern : Prosite (Expaxy)INTERFERON_A_B_D (PS00252)   
Domains : Interpro (EBI)4_helix_cytokine-like_core    4_helix_cytokine_core    Interferon_alpha/beta/delta   
Domain families : Pfam (Sanger)Interferon (PF00143)   
Domain families : Pfam (NCBI)pfam00143   
Domain families : Smart (EMBL)IFabd (SM00076)  
Conserved Domain (NCBI)IFNW1
DMDM Disease mutations3467
Blocks (Seattle)IFNW1
PDB (SRS)3SE4   
PDB (PDBSum)3SE4   
PDB (IMB)3SE4   
PDB (RSDB)3SE4   
Structural Biology KnowledgeBase3SE4   
SCOP (Structural Classification of Proteins)3SE4   
CATH (Classification of proteins structures)3SE4   
SuperfamilyP05000
Human Protein AtlasENSG00000177047
Peptide AtlasP05000
HPRD00944
IPIIPI00006434   
Protein Interaction databases
DIP (DOE-UCLA)P05000
IntAct (EBI)P05000
FunCoupENSG00000177047
BioGRIDIFNW1
STRING (EMBL)IFNW1
ZODIACIFNW1
Ontologies - Pathways
QuickGOP05000
Ontology : AmiGOadaptive immune response  T cell activation involved in immune response  natural killer cell activation involved in immune response  cytokine activity  cytokine receptor binding  type I interferon receptor binding  extracellular space  humoral immune response  cell cycle arrest  response to virus  cytokine-mediated signaling pathway  B cell differentiation  positive regulation of peptidyl-serine phosphorylation of STAT protein  B cell proliferation  response to exogenous dsRNA  innate immune response  defense response to virus  
Ontology : EGO-EBIadaptive immune response  T cell activation involved in immune response  natural killer cell activation involved in immune response  cytokine activity  cytokine receptor binding  type I interferon receptor binding  extracellular space  humoral immune response  cell cycle arrest  response to virus  cytokine-mediated signaling pathway  B cell differentiation  positive regulation of peptidyl-serine phosphorylation of STAT protein  B cell proliferation  response to exogenous dsRNA  innate immune response  defense response to virus  
Pathways : KEGGCytokine-cytokine receptor interaction    RIG-I-like receptor signaling pathway    Jak-STAT signaling pathway   
NDEx NetworkIFNW1
Atlas of Cancer Signalling NetworkIFNW1
Wikipedia pathwaysIFNW1
Orthology - Evolution
OrthoDB3467
GeneTree (enSembl)ENSG00000177047
Phylogenetic Trees/Animal Genes : TreeFamIFNW1
HOVERGENP05000
HOGENOMP05000
Homologs : HomoloGeneIFNW1
Homology/Alignments : Family Browser (UCSC)IFNW1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIFNW1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IFNW1
dbVarIFNW1
ClinVarIFNW1
1000_GenomesIFNW1 
Exome Variant ServerIFNW1
ExAC (Exome Aggregation Consortium)IFNW1 (select the gene name)
Genetic variants : HAPMAP3467
Genomic Variants (DGV)IFNW1 [DGVbeta]
DECIPHERIFNW1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisIFNW1 
Mutations
ICGC Data PortalIFNW1 
TCGA Data PortalIFNW1 
Broad Tumor PortalIFNW1
OASIS PortalIFNW1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICIFNW1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDIFNW1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch IFNW1
DgiDB (Drug Gene Interaction Database)IFNW1
DoCM (Curated mutations)IFNW1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IFNW1 (select a term)
intoGenIFNW1
Cancer3DIFNW1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM147553   
Orphanet
MedgenIFNW1
Genetic Testing Registry IFNW1
NextProtP05000 [Medical]
TSGene3467
GENETestsIFNW1
Target ValidationIFNW1
Huge Navigator IFNW1 [HugePedia]
snp3D : Map Gene to Disease3467
BioCentury BCIQIFNW1
ClinGenIFNW1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD3467
Chemical/Pharm GKB GenePA29683
Clinical trialIFNW1
Miscellaneous
canSAR (ICR)IFNW1 (select the gene name)
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineIFNW1
EVEXIFNW1
GoPubMedIFNW1
iHOPIFNW1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:12:51 CEST 2017

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