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IFRD1 (interferon related developmental regulator 1)

Identity

Alias_namesinterferon-related developmental regulator 1
Alias_symbol (synonym)PC4
TIS7
Other alias
HGNC (Hugo) IFRD1
LocusID (NCBI) 3475
Atlas_Id 55164
Location 7q31.1  [Link to chromosome band 7q31]
Location_base_pair Starts at 112423144 and ends at 112477203 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
DNAJB2 (2q35) / IFRD1 (7q31.1)IFRD1 (7q31.1) / CISD1 (10q21.1)IFRD1 (7q31.1) / FUT8 (14q23.3)
IFRD1 (7q31.1) / RPL13A (19q13.33)SLC25A36 (3q23) / IFRD1 (7q31.1)ZNF277 (7q31.1) / IFRD1 (7q31.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)IFRD1   5456
Cards
Entrez_Gene (NCBI)IFRD1  3475  interferon related developmental regulator 1
AliasesPC4; TIS7
GeneCards (Weizmann)IFRD1
Ensembl hg19 (Hinxton)ENSG00000006652 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000006652 [Gene_View]  chr7:112423144-112477203 [Contig_View]  IFRD1 [Vega]
ICGC DataPortalENSG00000006652
TCGA cBioPortalIFRD1
AceView (NCBI)IFRD1
Genatlas (Paris)IFRD1
WikiGenes3475
SOURCE (Princeton)IFRD1
Genetics Home Reference (NIH)IFRD1
Genomic and cartography
GoldenPath hg38 (UCSC)IFRD1  -     chr7:112423144-112477203 +  7q31.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)IFRD1  -     7q31.1   [Description]    (hg19-Feb_2009)
EnsemblIFRD1 - 7q31.1 [CytoView hg19]  IFRD1 - 7q31.1 [CytoView hg38]
Mapping of homologs : NCBIIFRD1 [Mapview hg19]  IFRD1 [Mapview hg38]
OMIM603502   
Gene and transcription
Genbank (Entrez)AK225222 AK297509 AK298894 AK308066 AK313211
RefSeq transcript (Entrez)NM_001007245 NM_001197079 NM_001197080 NM_001550
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)IFRD1
Cluster EST : UnigeneHs.744747 [ NCBI ]
CGAP (NCI)Hs.744747
Alternative Splicing GalleryENSG00000006652
Gene ExpressionIFRD1 [ NCBI-GEO ]   IFRD1 [ EBI - ARRAY_EXPRESS ]   IFRD1 [ SEEK ]   IFRD1 [ MEM ]
Gene Expression Viewer (FireBrowse)IFRD1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3475
GTEX Portal (Tissue expression)IFRD1
Protein : pattern, domain, 3D structure
UniProt/SwissProtO00458   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO00458  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO00458
Splice isoforms : SwissVarO00458
PhosPhoSitePlusO00458
Domains : Interpro (EBI)ARM-like    ARM-type_fold    Interferon-rel_develop_reg_C    Interferon-rel_develop_reg_N   
Domain families : Pfam (Sanger)IFRD (PF05004)    IFRD_C (PF04836)   
Domain families : Pfam (NCBI)pfam05004    pfam04836   
Conserved Domain (NCBI)IFRD1
DMDM Disease mutations3475
Blocks (Seattle)IFRD1
SuperfamilyO00458
Human Protein AtlasENSG00000006652
Peptide AtlasO00458
HPRD04612
IPIIPI00011735   IPI00926922   IPI00926238   IPI00925408   IPI00925687   IPI00925900   IPI00926047   IPI00927143   IPI01012861   IPI00979565   
Protein Interaction databases
DIP (DOE-UCLA)O00458
IntAct (EBI)O00458
FunCoupENSG00000006652
BioGRIDIFRD1
STRING (EMBL)IFRD1
ZODIACIFRD1
Ontologies - Pathways
QuickGOO00458
Ontology : AmiGOnucleus  cytoplasm  myoblast fate determination  striated muscle tissue development  negative regulation of axon extension  skeletal muscle tissue regeneration  negative regulation of collateral sprouting  
Ontology : EGO-EBInucleus  cytoplasm  myoblast fate determination  striated muscle tissue development  negative regulation of axon extension  skeletal muscle tissue regeneration  negative regulation of collateral sprouting  
NDEx NetworkIFRD1
Atlas of Cancer Signalling NetworkIFRD1
Wikipedia pathwaysIFRD1
Orthology - Evolution
OrthoDB3475
GeneTree (enSembl)ENSG00000006652
Phylogenetic Trees/Animal Genes : TreeFamIFRD1
HOVERGENO00458
HOGENOMO00458
Homologs : HomoloGeneIFRD1
Homology/Alignments : Family Browser (UCSC)IFRD1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIFRD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IFRD1
dbVarIFRD1
ClinVarIFRD1
1000_GenomesIFRD1 
Exome Variant ServerIFRD1
ExAC (Exome Aggregation Consortium)IFRD1 (select the gene name)
Genetic variants : HAPMAP3475
Genomic Variants (DGV)IFRD1 [DGVbeta]
DECIPHERIFRD1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisIFRD1 
Mutations
ICGC Data PortalIFRD1 
TCGA Data PortalIFRD1 
Broad Tumor PortalIFRD1
OASIS PortalIFRD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICIFRD1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDIFRD1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch IFRD1
DgiDB (Drug Gene Interaction Database)IFRD1
DoCM (Curated mutations)IFRD1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IFRD1 (select a term)
intoGenIFRD1
Cancer3DIFRD1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603502   
Orphanet13788   
MedgenIFRD1
Genetic Testing Registry IFRD1
NextProtO00458 [Medical]
TSGene3475
GENETestsIFRD1
Target ValidationIFRD1
Huge Navigator IFRD1 [HugePedia]
snp3D : Map Gene to Disease3475
BioCentury BCIQIFRD1
ClinGenIFRD1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD3475
Chemical/Pharm GKB GenePA29691
Clinical trialIFRD1
Miscellaneous
canSAR (ICR)IFRD1 (select the gene name)
Probes
Litterature
PubMed45 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineIFRD1
EVEXIFRD1
GoPubMedIFRD1
iHOPIFRD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:38:02 CEST 2017

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