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IFRD1 (interferon related developmental regulator 1)

Identity

Alias (NCBI)PC4
TIS7
HGNC (Hugo) IFRD1
HGNC Alias symbPC4
TIS7
HGNC Previous nameinterferon-related developmental regulator 1
LocusID (NCBI) 3475
Atlas_Id 55164
Location 7q31.1  [Link to chromosome band 7q31]
Location_base_pair Starts at 112450428 and ends at 112477203 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
DNAJB2 (2q35) / IFRD1 (7q31.1)IFRD1 (7q31.1) / CISD1 (10q21.1)IFRD1 (7q31.1) / FUT8 (14q23.3)
IFRD1 (7q31.1) / RPL13A (19q13.33)SLC25A36 (3q23) / IFRD1 (7q31.1)ZNF277 (7q31.1) / IFRD1 (7q31.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)IFRD1   5456
Cards
Entrez_Gene (NCBI)IFRD1    interferon related developmental regulator 1
AliasesPC4; TIS7
GeneCards (Weizmann)IFRD1
Ensembl hg19 (Hinxton)ENSG00000006652 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000006652 [Gene_View]  ENSG00000006652 [Sequence]  chr7:112450428-112477203 [Contig_View]  IFRD1 [Vega]
ICGC DataPortalENSG00000006652
TCGA cBioPortalIFRD1
AceView (NCBI)IFRD1
Genatlas (Paris)IFRD1
SOURCE (Princeton)IFRD1
Genetics Home Reference (NIH)IFRD1
Genomic and cartography
GoldenPath hg38 (UCSC)IFRD1  -     chr7:112450428-112477203 +  7q31.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)IFRD1  -     7q31.1   [Description]    (hg19-Feb_2009)
GoldenPathIFRD1 - 7q31.1 [CytoView hg19]  IFRD1 - 7q31.1 [CytoView hg38]
ImmunoBaseENSG00000006652
Genome Data Viewer NCBIIFRD1 [Mapview hg19]  
OMIM603502   
Gene and transcription
Genbank (Entrez)AK225222 AK297509 AK298894 AK308066 AK313211
RefSeq transcript (Entrez)NM_001007245 NM_001197079 NM_001197080 NM_001550
Consensus coding sequences : CCDS (NCBI)IFRD1
Gene ExpressionIFRD1 [ NCBI-GEO ]   IFRD1 [ EBI - ARRAY_EXPRESS ]   IFRD1 [ SEEK ]   IFRD1 [ MEM ]
Gene Expression Viewer (FireBrowse)IFRD1 [ Firebrowse - Broad ]
GenevisibleExpression of IFRD1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3475
GTEX Portal (Tissue expression)IFRD1
Human Protein AtlasENSG00000006652-IFRD1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO00458   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO00458  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO00458
PhosPhoSitePlusO00458
Domains : Interpro (EBI)ARM-type_fold    IFRD    Interferon-rel_develop_reg_C    Interferon-rel_develop_reg_N   
Domain families : Pfam (Sanger)IFRD (PF05004)    IFRD_C (PF04836)   
Domain families : Pfam (NCBI)pfam05004    pfam04836   
Conserved Domain (NCBI)IFRD1
SuperfamilyO00458
AlphaFold pdb e-kbO00458   
Human Protein Atlas [tissue]ENSG00000006652-IFRD1 [tissue]
HPRD04612
Protein Interaction databases
DIP (DOE-UCLA)O00458
IntAct (EBI)O00458
BioGRIDIFRD1
STRING (EMBL)IFRD1
ZODIACIFRD1
Ontologies - Pathways
QuickGOO00458
Ontology : AmiGOnucleus  regulation of transcription by RNA polymerase II  multicellular organism development  myoblast fate determination  
Ontology : EGO-EBInucleus  regulation of transcription by RNA polymerase II  multicellular organism development  myoblast fate determination  
NDEx NetworkIFRD1
Atlas of Cancer Signalling NetworkIFRD1
Wikipedia pathwaysIFRD1
Orthology - Evolution
OrthoDB3475
GeneTree (enSembl)ENSG00000006652
Phylogenetic Trees/Animal Genes : TreeFamIFRD1
Homologs : HomoloGeneIFRD1
Homology/Alignments : Family Browser (UCSC)IFRD1
Gene fusions - Rearrangements
Fusion : QuiverIFRD1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIFRD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IFRD1
dbVarIFRD1
ClinVarIFRD1
MonarchIFRD1
1000_GenomesIFRD1 
Exome Variant ServerIFRD1
GNOMAD BrowserENSG00000006652
Varsome BrowserIFRD1
ACMGIFRD1 variants
VarityO00458
Genomic Variants (DGV)IFRD1 [DGVbeta]
DECIPHERIFRD1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisIFRD1 
Mutations
ICGC Data PortalIFRD1 
TCGA Data PortalIFRD1 
Broad Tumor PortalIFRD1
OASIS PortalIFRD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICIFRD1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DIFRD1
Mutations and Diseases : HGMDIFRD1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaIFRD1
DgiDB (Drug Gene Interaction Database)IFRD1
DoCM (Curated mutations)IFRD1
CIViC (Clinical Interpretations of Variants in Cancer)IFRD1
Cancer3DIFRD1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603502   
Orphanet13788   
DisGeNETIFRD1
MedgenIFRD1
Genetic Testing Registry IFRD1
NextProtO00458 [Medical]
GENETestsIFRD1
Target ValidationIFRD1
Huge Navigator IFRD1 [HugePedia]
ClinGenIFRD1
Clinical trials, drugs, therapy
MyCancerGenomeIFRD1
Protein Interactions : CTDIFRD1
Pharm GKB GenePA29691
PharosO00458
Clinical trialIFRD1
Miscellaneous
canSAR (ICR)IFRD1
HarmonizomeIFRD1
DataMed IndexIFRD1
Probes
Litterature
PubMed57 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXIFRD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:13:28 CEST 2021

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