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IFRD2 (interferon related developmental regulator 2)

Identity

Alias_symbol (synonym)SKMc15
SM15
IFNRP
Other alias
HGNC (Hugo) IFRD2
LocusID (NCBI) 7866
Atlas_Id 64529
Location 3p21.31  [Link to chromosome band 3p21]
Location_base_pair Starts at 50287732 and ends at 50292595 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
IFRD2 (3p21.31) / IFRD2 (3p21.31)IFRD2 (3p21.31) / RNF123 (3p21.31)NR4A1 (12q13.13) / IFRD2 (3p21.31)
TMEM106C (12q13.11) / IFRD2 (3p21.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)IFRD2   5457
Cards
Entrez_Gene (NCBI)IFRD2  7866  interferon related developmental regulator 2
AliasesIFNRP; SKMc15; SM15
GeneCards (Weizmann)IFRD2
Ensembl hg19 (Hinxton)ENSG00000214706 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000214706 [Gene_View]  chr3:50287732-50292595 [Contig_View]  IFRD2 [Vega]
ICGC DataPortalENSG00000214706
TCGA cBioPortalIFRD2
AceView (NCBI)IFRD2
Genatlas (Paris)IFRD2
WikiGenes7866
SOURCE (Princeton)IFRD2
Genetics Home Reference (NIH)IFRD2
Genomic and cartography
GoldenPath hg38 (UCSC)IFRD2  -     chr3:50287732-50292595 -  3p21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)IFRD2  -     3p21.31   [Description]    (hg19-Feb_2009)
EnsemblIFRD2 - 3p21.31 [CytoView hg19]  IFRD2 - 3p21.31 [CytoView hg38]
Mapping of homologs : NCBIIFRD2 [Mapview hg19]  IFRD2 [Mapview hg38]
OMIM602725   
Gene and transcription
Genbank (Entrez)AI292274 AK074763 AK097765 AK309114 BC001327
RefSeq transcript (Entrez)NM_006764
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)IFRD2
Cluster EST : UnigeneHs.743323 [ NCBI ]
CGAP (NCI)Hs.743323
Alternative Splicing GalleryENSG00000214706
Gene ExpressionIFRD2 [ NCBI-GEO ]   IFRD2 [ EBI - ARRAY_EXPRESS ]   IFRD2 [ SEEK ]   IFRD2 [ MEM ]
Gene Expression Viewer (FireBrowse)IFRD2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7866
GTEX Portal (Tissue expression)IFRD2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ12894   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ12894  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ12894
Splice isoforms : SwissVarQ12894
PhosPhoSitePlusQ12894
Domains : Interpro (EBI)ARM-like    ARM-type_fold    Interferon-rel_develop_reg_C    Interferon-rel_develop_reg_N   
Domain families : Pfam (Sanger)IFRD (PF05004)    IFRD_C (PF04836)   
Domain families : Pfam (NCBI)pfam05004    pfam04836   
Conserved Domain (NCBI)IFRD2
DMDM Disease mutations7866
Blocks (Seattle)IFRD2
SuperfamilyQ12894
Human Protein AtlasENSG00000214706
Peptide AtlasQ12894
HPRD04101
IPIIPI00926673   IPI00395667   IPI00926223   IPI00926392   IPI00925771   
Protein Interaction databases
DIP (DOE-UCLA)Q12894
IntAct (EBI)Q12894
FunCoupENSG00000214706
BioGRIDIFRD2
STRING (EMBL)IFRD2
ZODIACIFRD2
Ontologies - Pathways
QuickGOQ12894
Ontology : AmiGOmolecular_function  protein binding  nucleus  
Ontology : EGO-EBImolecular_function  protein binding  nucleus  
NDEx NetworkIFRD2
Atlas of Cancer Signalling NetworkIFRD2
Wikipedia pathwaysIFRD2
Orthology - Evolution
OrthoDB7866
GeneTree (enSembl)ENSG00000214706
Phylogenetic Trees/Animal Genes : TreeFamIFRD2
HOVERGENQ12894
HOGENOMQ12894
Homologs : HomoloGeneIFRD2
Homology/Alignments : Family Browser (UCSC)IFRD2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIFRD2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IFRD2
dbVarIFRD2
ClinVarIFRD2
1000_GenomesIFRD2 
Exome Variant ServerIFRD2
ExAC (Exome Aggregation Consortium)IFRD2 (select the gene name)
Genetic variants : HAPMAP7866
Genomic Variants (DGV)IFRD2 [DGVbeta]
DECIPHERIFRD2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisIFRD2 
Mutations
ICGC Data PortalIFRD2 
TCGA Data PortalIFRD2 
Broad Tumor PortalIFRD2
OASIS PortalIFRD2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICIFRD2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDIFRD2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch IFRD2
DgiDB (Drug Gene Interaction Database)IFRD2
DoCM (Curated mutations)IFRD2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IFRD2 (select a term)
intoGenIFRD2
Cancer3DIFRD2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602725   
Orphanet
MedgenIFRD2
Genetic Testing Registry IFRD2
NextProtQ12894 [Medical]
TSGene7866
GENETestsIFRD2
Target ValidationIFRD2
Huge Navigator IFRD2 [HugePedia]
snp3D : Map Gene to Disease7866
BioCentury BCIQIFRD2
ClinGenIFRD2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7866
Chemical/Pharm GKB GenePA29692
Clinical trialIFRD2
Miscellaneous
canSAR (ICR)IFRD2 (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineIFRD2
EVEXIFRD2
GoPubMedIFRD2
iHOPIFRD2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:11:00 CEST 2017

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