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IFT20 (intraflagellar transport 20)

Identity

Alias (NCBI)-
HGNC (Hugo) IFT20
HGNC Previous nameintraflagellar transport 20 homolog (Chlamydomonas)
LocusID (NCBI) 90410
Atlas_Id 56430
Location 17q11.2  [Link to chromosome band 17q11]
Location_base_pair Starts at 28328326 and ends at 28335472 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CCDC93 (2q14.1) / IFT20 (17q11.2)IFT20 (17q11.2) / AC002094.1 ()IFT20 (17q11.2) / GLS (2q32.2)
RAI1 (17p11.2) / IFT20 (17q11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)IFT20   30989
Cards
Entrez_Gene (NCBI)IFT20    intraflagellar transport 20
Aliases
GeneCards (Weizmann)IFT20
Ensembl hg19 (Hinxton)ENSG00000109083 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000109083 [Gene_View]  ENSG00000109083 [Sequence]  chr17:28328326-28335472 [Contig_View]  IFT20 [Vega]
ICGC DataPortalENSG00000109083
TCGA cBioPortalIFT20
AceView (NCBI)IFT20
Genatlas (Paris)IFT20
SOURCE (Princeton)IFT20
Genetics Home Reference (NIH)IFT20
Genomic and cartography
GoldenPath hg38 (UCSC)IFT20  -     chr17:28328326-28335472 -  17q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)IFT20  -     17q11.2   [Description]    (hg19-Feb_2009)
GoldenPathIFT20 - 17q11.2 [CytoView hg19]  IFT20 - 17q11.2 [CytoView hg38]
ImmunoBaseENSG00000109083
Genome Data Viewer NCBIIFT20 [Mapview hg19]  
OMIM614394   
Gene and transcription
Genbank (Entrez)AA490722 AF070643 AI768816 AK297769 AK309232
RefSeq transcript (Entrez)NM_001267774 NM_001267775 NM_001267776 NM_001267777 NM_001267778 NM_174887
Consensus coding sequences : CCDS (NCBI)IFT20
Gene ExpressionIFT20 [ NCBI-GEO ]   IFT20 [ EBI - ARRAY_EXPRESS ]   IFT20 [ SEEK ]   IFT20 [ MEM ]
Gene Expression Viewer (FireBrowse)IFT20 [ Firebrowse - Broad ]
GenevisibleExpression of IFT20 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)90410
GTEX Portal (Tissue expression)IFT20
Human Protein AtlasENSG00000109083-IFT20 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IY31   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IY31  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IY31
PhosPhoSitePlusQ8IY31
Domains : Interpro (EBI)FT20   
Domain families : Pfam (Sanger)IFT20 (PF14931)   
Domain families : Pfam (NCBI)pfam14931   
Conserved Domain (NCBI)IFT20
SuperfamilyQ8IY31
AlphaFold pdb e-kbQ8IY31   
Human Protein Atlas [tissue]ENSG00000109083-IFT20 [tissue]
HPRD17137
Protein Interaction databases
DIP (DOE-UCLA)Q8IY31
IntAct (EBI)Q8IY31
BioGRIDIFT20
STRING (EMBL)IFT20
ZODIACIFT20
Ontologies - Pathways
QuickGOQ8IY31
Ontology : AmiGOGolgi membrane  establishment of planar polarity  photoreceptor outer segment  kidney development  opsin binding  protein binding  Golgi apparatus  Golgi apparatus  cis-Golgi network  centrosome  centrosome  centriole  microvillus  cilium  cilium  cilium  smoothened signaling pathway  spermatogenesis  visual learning  intraciliary transport particle B  intraciliary transport particle B  small GTPase binding  motile cilium  photoreceptor connecting cilium  stereocilium  protein localization to Golgi apparatus  intraciliary transport involved in cilium assembly  photoreceptor cell outer segment organization  opsin transport  intraciliary transport  dendrite terminus  establishment of epithelial cell apical/basal polarity  centrosome localization  cardiac muscle cell differentiation  inner ear receptor cell stereocilium organization  cilium assembly  cilium assembly  regulation of canonical Wnt signaling pathway  neural precursor cell proliferation  protein localization to cilium  protein localization to plasma membrane  cochlea development  ciliary tip  ciliary base  regulation of cilium assembly  kinociliary basal body  regulation of platelet-derived growth factor receptor-alpha signaling pathway  regulation of autophagosome assembly  
Ontology : EGO-EBIGolgi membrane  establishment of planar polarity  photoreceptor outer segment  kidney development  opsin binding  protein binding  Golgi apparatus  Golgi apparatus  cis-Golgi network  centrosome  centrosome  centriole  microvillus  cilium  cilium  cilium  smoothened signaling pathway  spermatogenesis  visual learning  intraciliary transport particle B  intraciliary transport particle B  small GTPase binding  motile cilium  photoreceptor connecting cilium  stereocilium  protein localization to Golgi apparatus  intraciliary transport involved in cilium assembly  photoreceptor cell outer segment organization  opsin transport  intraciliary transport  dendrite terminus  establishment of epithelial cell apical/basal polarity  centrosome localization  cardiac muscle cell differentiation  inner ear receptor cell stereocilium organization  cilium assembly  cilium assembly  regulation of canonical Wnt signaling pathway  neural precursor cell proliferation  protein localization to cilium  protein localization to plasma membrane  cochlea development  ciliary tip  ciliary base  regulation of cilium assembly  kinociliary basal body  regulation of platelet-derived growth factor receptor-alpha signaling pathway  regulation of autophagosome assembly  
NDEx NetworkIFT20
Atlas of Cancer Signalling NetworkIFT20
Wikipedia pathwaysIFT20
Orthology - Evolution
OrthoDB90410
GeneTree (enSembl)ENSG00000109083
Phylogenetic Trees/Animal Genes : TreeFamIFT20
Homologs : HomoloGeneIFT20
Homology/Alignments : Family Browser (UCSC)IFT20
Gene fusions - Rearrangements
Fusion : QuiverIFT20
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIFT20 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IFT20
dbVarIFT20
ClinVarIFT20
MonarchIFT20
1000_GenomesIFT20 
Exome Variant ServerIFT20
GNOMAD BrowserENSG00000109083
Varsome BrowserIFT20
ACMGIFT20 variants
VarityQ8IY31
Genomic Variants (DGV)IFT20 [DGVbeta]
DECIPHERIFT20 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisIFT20 
Mutations
ICGC Data PortalIFT20 
TCGA Data PortalIFT20 
Broad Tumor PortalIFT20
OASIS PortalIFT20 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICIFT20  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DIFT20
Mutations and Diseases : HGMDIFT20
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaIFT20
DgiDB (Drug Gene Interaction Database)IFT20
DoCM (Curated mutations)IFT20
CIViC (Clinical Interpretations of Variants in Cancer)IFT20
Cancer3DIFT20
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614394   
Orphanet
DisGeNETIFT20
MedgenIFT20
Genetic Testing Registry IFT20
NextProtQ8IY31 [Medical]
GENETestsIFT20
Target ValidationIFT20
Huge Navigator IFT20 [HugePedia]
ClinGenIFT20
Clinical trials, drugs, therapy
MyCancerGenomeIFT20
Protein Interactions : CTDIFT20
Pharm GKB GenePA142671663
PharosQ8IY31
Clinical trialIFT20
Miscellaneous
canSAR (ICR)IFT20
HarmonizomeIFT20
DataMed IndexIFT20
Probes
Litterature
PubMed49 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXIFT20
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:13:29 CEST 2021

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