Atlas of Genetics and Cytogenetics in Oncology and Haematology


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IFT20 (intraflagellar transport 20)

Identity

Alias_namesintraflagellar transport 20 homolog (Chlamydomonas)
Other alias-
HGNC (Hugo) IFT20
LocusID (NCBI) 90410
Atlas_Id 56430
Location 17q11.2  [Link to chromosome band 17q11]
Location_base_pair Starts at 26655351 and ends at 26662515 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CCDC93 (2q14.1) / IFT20 (17q11.2)IFT20 (17q11.2) / AC002094.1 ()IFT20 (17q11.2) / GLS (2q32.2)
RAI1 (17p11.2) / IFT20 (17q11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)IFT20   30989
Cards
Entrez_Gene (NCBI)IFT20  90410  intraflagellar transport 20
Aliases
GeneCards (Weizmann)IFT20
Ensembl hg19 (Hinxton)ENSG00000109083 [Gene_View]  chr17:26655351-26662515 [Contig_View]  IFT20 [Vega]
Ensembl hg38 (Hinxton)ENSG00000109083 [Gene_View]  chr17:26655351-26662515 [Contig_View]  IFT20 [Vega]
ICGC DataPortalENSG00000109083
TCGA cBioPortalIFT20
AceView (NCBI)IFT20
Genatlas (Paris)IFT20
WikiGenes90410
SOURCE (Princeton)IFT20
Genetics Home Reference (NIH)IFT20
Genomic and cartography
GoldenPath hg19 (UCSC)IFT20  -     chr17:26655351-26662515 -  17q11.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)IFT20  -     17q11.2   [Description]    (hg38-Dec_2013)
EnsemblIFT20 - 17q11.2 [CytoView hg19]  IFT20 - 17q11.2 [CytoView hg38]
Mapping of homologs : NCBIIFT20 [Mapview hg19]  IFT20 [Mapview hg38]
OMIM614394   
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001267774 NM_001267775 NM_001267776 NM_001267777 NM_001267778 NM_174887
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)IFT20
Cluster EST : UnigeneHs.744876 [ NCBI ]
CGAP (NCI)Hs.744876
Alternative Splicing GalleryENSG00000109083
Gene ExpressionIFT20 [ NCBI-GEO ]   IFT20 [ EBI - ARRAY_EXPRESS ]   IFT20 [ SEEK ]   IFT20 [ MEM ]
Gene Expression Viewer (FireBrowse)IFT20 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)90410
GTEX Portal (Tissue expression)IFT20
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IY31   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IY31  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IY31
Splice isoforms : SwissVarQ8IY31
PhosPhoSitePlusQ8IY31
Domains : Interpro (EBI)FT20   
Domain families : Pfam (Sanger)IFT20 (PF14931)   
Domain families : Pfam (NCBI)pfam14931   
Conserved Domain (NCBI)IFT20
DMDM Disease mutations90410
Blocks (Seattle)IFT20
SuperfamilyQ8IY31
Human Protein AtlasENSG00000109083
Peptide AtlasQ8IY31
HPRD17137
IPIIPI00784847   IPI00217619   IPI00414091   IPI00788899   
Protein Interaction databases
DIP (DOE-UCLA)Q8IY31
IntAct (EBI)Q8IY31
FunCoupENSG00000109083
BioGRIDIFT20
STRING (EMBL)IFT20
ZODIACIFT20
Ontologies - Pathways
QuickGOQ8IY31
Ontology : AmiGOGolgi membrane  establishment of planar polarity  photoreceptor outer segment  kidney development  opsin binding  protein binding  cis-Golgi network  centrosome  centriole  microvillus  cilium  smoothened signaling pathway  visual learning  Rab GTPase binding  intraciliary transport particle B  motile cilium  photoreceptor connecting cilium  stereocilium  protein localization to Golgi apparatus  photoreceptor cell outer segment organization  opsin transport  intraciliary transport  cilium assembly  dendrite terminus  centrosome localization  cardiac muscle cell differentiation  inner ear receptor stereocilium organization  regulation of canonical Wnt signaling pathway  neural precursor cell proliferation  protein localization to cilium  extracellular exosome  primary cilium  establishment of protein localization to plasma membrane  cochlea development  ciliary tip  ciliary base  regulation of cilium assembly  kinociliary basal body  regulation of autophagosome assembly  
Ontology : EGO-EBIGolgi membrane  establishment of planar polarity  photoreceptor outer segment  kidney development  opsin binding  protein binding  cis-Golgi network  centrosome  centriole  microvillus  cilium  smoothened signaling pathway  visual learning  Rab GTPase binding  intraciliary transport particle B  motile cilium  photoreceptor connecting cilium  stereocilium  protein localization to Golgi apparatus  photoreceptor cell outer segment organization  opsin transport  intraciliary transport  cilium assembly  dendrite terminus  centrosome localization  cardiac muscle cell differentiation  inner ear receptor stereocilium organization  regulation of canonical Wnt signaling pathway  neural precursor cell proliferation  protein localization to cilium  extracellular exosome  primary cilium  establishment of protein localization to plasma membrane  cochlea development  ciliary tip  ciliary base  regulation of cilium assembly  kinociliary basal body  regulation of autophagosome assembly  
NDEx NetworkIFT20
Atlas of Cancer Signalling NetworkIFT20
Wikipedia pathwaysIFT20
Orthology - Evolution
OrthoDB90410
GeneTree (enSembl)ENSG00000109083
Phylogenetic Trees/Animal Genes : TreeFamIFT20
HOVERGENQ8IY31
HOGENOMQ8IY31
Homologs : HomoloGeneIFT20
Homology/Alignments : Family Browser (UCSC)IFT20
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIFT20 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IFT20
dbVarIFT20
ClinVarIFT20
1000_GenomesIFT20 
Exome Variant ServerIFT20
ExAC (Exome Aggregation Consortium)IFT20 (select the gene name)
Genetic variants : HAPMAP90410
Genomic Variants (DGV)IFT20 [DGVbeta]
DECIPHER (Syndromes)17:26655351-26662515  ENSG00000109083
CONAN: Copy Number AnalysisIFT20 
Mutations
ICGC Data PortalIFT20 
TCGA Data PortalIFT20 
Broad Tumor PortalIFT20
OASIS PortalIFT20 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICIFT20  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDIFT20
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch IFT20
DgiDB (Drug Gene Interaction Database)IFT20
DoCM (Curated mutations)IFT20 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IFT20 (select a term)
intoGenIFT20
Cancer3DIFT20(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614394   
Orphanet
MedgenIFT20
Genetic Testing Registry IFT20
NextProtQ8IY31 [Medical]
TSGene90410
GENETestsIFT20
Huge Navigator IFT20 [HugePedia]
snp3D : Map Gene to Disease90410
BioCentury BCIQIFT20
ClinGenIFT20
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD90410
Chemical/Pharm GKB GenePA142671663
Clinical trialIFT20
Miscellaneous
canSAR (ICR)IFT20 (select the gene name)
Probes
Litterature
PubMed35 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineIFT20
EVEXIFT20
GoPubMedIFT20
iHOPIFT20
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 13:10:20 CET 2017

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