Atlas of Genetics and Cytogenetics in Oncology and Haematology


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IFT22 (intraflagellar transport 22)

Identity

Alias_namesRABL5
RAB, member RAS oncogene family-like 5
intraflagellar transport 22 homolog (Chlamydomonas)
Alias_symbol (synonym)FLJ14117
FLJ13225
DKFZp761N0823
Other alias
HGNC (Hugo) IFT22
LocusID (NCBI) 64792
Atlas_Id 42019
Location 7q22.1  [Link to chromosome band 7q22]
Location_base_pair Starts at 101313367 and ends at 101321823 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
MYO1C (17p13.3) / IFT22 (7q22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)IFT22   21895
Cards
Entrez_Gene (NCBI)IFT22  64792  intraflagellar transport 22
AliasesRABL5
GeneCards (Weizmann)IFT22
Ensembl hg19 (Hinxton)ENSG00000128581 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000128581 [Gene_View]  chr7:101313367-101321823 [Contig_View]  IFT22 [Vega]
ICGC DataPortalENSG00000128581
TCGA cBioPortalIFT22
AceView (NCBI)IFT22
Genatlas (Paris)IFT22
WikiGenes64792
SOURCE (Princeton)IFT22
Genetics Home Reference (NIH)IFT22
Genomic and cartography
GoldenPath hg38 (UCSC)IFT22  -     chr7:101313367-101321823 -  7q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)IFT22  -     7q22.1   [Description]    (hg19-Feb_2009)
EnsemblIFT22 - 7q22.1 [CytoView hg19]  IFT22 - 7q22.1 [CytoView hg38]
Mapping of homologs : NCBIIFT22 [Mapview hg19]  IFT22 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK023287 AK024179 AK292254 AK294653 AK298888
RefSeq transcript (Entrez)NM_001130820 NM_001130821 NM_001130822 NM_001287525 NM_001287526 NM_022777
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)IFT22
Cluster EST : UnigeneHs.389104 [ NCBI ]
CGAP (NCI)Hs.389104
Alternative Splicing GalleryENSG00000128581
Gene ExpressionIFT22 [ NCBI-GEO ]   IFT22 [ EBI - ARRAY_EXPRESS ]   IFT22 [ SEEK ]   IFT22 [ MEM ]
Gene Expression Viewer (FireBrowse)IFT22 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64792
GTEX Portal (Tissue expression)IFT22
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H7X7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H7X7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H7X7
Splice isoforms : SwissVarQ9H7X7
PhosPhoSitePlusQ9H7X7
Domains : Interpro (EBI)MIRO-like    P-loop_NTPase   
Domain families : Pfam (Sanger)Roc (PF08477)   
Domain families : Pfam (NCBI)pfam08477   
Conserved Domain (NCBI)IFT22
DMDM Disease mutations64792
Blocks (Seattle)IFT22
SuperfamilyQ9H7X7
Human Protein AtlasENSG00000128581
Peptide AtlasQ9H7X7
HPRD15204
IPIIPI00009700   IPI00011360   IPI00922845   IPI00925921   IPI00909609   
Protein Interaction databases
DIP (DOE-UCLA)Q9H7X7
IntAct (EBI)Q9H7X7
FunCoupENSG00000128581
BioGRIDIFT22
STRING (EMBL)IFT22
ZODIACIFT22
Ontologies - Pathways
QuickGOQ9H7X7
Ontology : AmiGOGTP binding  centrosome  cilium  small GTPase mediated signal transduction  intraciliary transport particle B  intraciliary transport involved in cilium assembly  ciliary tip  
Ontology : EGO-EBIGTP binding  centrosome  cilium  small GTPase mediated signal transduction  intraciliary transport particle B  intraciliary transport involved in cilium assembly  ciliary tip  
NDEx NetworkIFT22
Atlas of Cancer Signalling NetworkIFT22
Wikipedia pathwaysIFT22
Orthology - Evolution
OrthoDB64792
GeneTree (enSembl)ENSG00000128581
Phylogenetic Trees/Animal Genes : TreeFamIFT22
HOVERGENQ9H7X7
HOGENOMQ9H7X7
Homologs : HomoloGeneIFT22
Homology/Alignments : Family Browser (UCSC)IFT22
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIFT22 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IFT22
dbVarIFT22
ClinVarIFT22
1000_GenomesIFT22 
Exome Variant ServerIFT22
ExAC (Exome Aggregation Consortium)IFT22 (select the gene name)
Genetic variants : HAPMAP64792
Genomic Variants (DGV)IFT22 [DGVbeta]
DECIPHERIFT22 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisIFT22 
Mutations
ICGC Data PortalIFT22 
TCGA Data PortalIFT22 
Broad Tumor PortalIFT22
OASIS PortalIFT22 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDIFT22
BioMutasearch IFT22
DgiDB (Drug Gene Interaction Database)IFT22
DoCM (Curated mutations)IFT22 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IFT22 (select a term)
intoGenIFT22
Cancer3DIFT22(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenIFT22
Genetic Testing Registry IFT22
NextProtQ9H7X7 [Medical]
TSGene64792
GENETestsIFT22
Target ValidationIFT22
Huge Navigator IFT22 [HugePedia]
snp3D : Map Gene to Disease64792
BioCentury BCIQIFT22
ClinGenIFT22
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD64792
Chemical/Pharm GKB GenePA134871769
Clinical trialIFT22
Miscellaneous
canSAR (ICR)IFT22 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineIFT22
EVEXIFT22
GoPubMedIFT22
iHOPIFT22
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:12:52 CEST 2017

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