Atlas of Genetics and Cytogenetics in Oncology and Haematology


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IFT27 (intraflagellar transport 27)

Identity

Alias_namesRABL4
RAB, member of RAS oncogene family-like 4
intraflagellar transport 27 homolog (Chlamydomonas)
Alias_symbol (synonym)RAYL
BBS19
Other alias
HGNC (Hugo) IFT27
LocusID (NCBI) 11020
Atlas_Id 42018
Location 22q12.3  [Link to chromosome band 22q12]
Location_base_pair Starts at 37154246 and ends at 37172177 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
IFT27 (22q12.3) / GPR143 (Xp22.2)IFT27 (22q12.3) / SRRM2 (16p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)IFT27   18626
Cards
Entrez_Gene (NCBI)IFT27  11020  intraflagellar transport 27
AliasesBBS19; RABL4; RAYL
GeneCards (Weizmann)IFT27
Ensembl hg19 (Hinxton)ENSG00000100360 [Gene_View]  chr22:37154246-37172177 [Contig_View]  IFT27 [Vega]
Ensembl hg38 (Hinxton)ENSG00000100360 [Gene_View]  chr22:37154246-37172177 [Contig_View]  IFT27 [Vega]
ICGC DataPortalENSG00000100360
TCGA cBioPortalIFT27
AceView (NCBI)IFT27
Genatlas (Paris)IFT27
WikiGenes11020
SOURCE (Princeton)IFT27
Genetics Home Reference (NIH)IFT27
Genomic and cartography
GoldenPath hg19 (UCSC)IFT27  -     chr22:37154246-37172177 -  22q12.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)IFT27  -     22q12.3   [Description]    (hg38-Dec_2013)
EnsemblIFT27 - 22q12.3 [CytoView hg19]  IFT27 - 22q12.3 [CytoView hg38]
Mapping of homologs : NCBIIFT27 [Mapview hg19]  IFT27 [Mapview hg38]
OMIM615870   615996   
Gene and transcription
Genbank (Entrez)AA809074 AB209424 AI215119 AK090708 AK307105
RefSeq transcript (Entrez)NM_001177701 NM_001177702 NM_006860
RefSeq genomic (Entrez)NC_000022 NC_018933 NG_034205 NT_011520 NW_004929430
Consensus coding sequences : CCDS (NCBI)IFT27
Cluster EST : UnigeneHs.415172 [ NCBI ]
CGAP (NCI)Hs.415172
Alternative Splicing GalleryENSG00000100360
Gene ExpressionIFT27 [ NCBI-GEO ]   IFT27 [ EBI - ARRAY_EXPRESS ]   IFT27 [ SEEK ]   IFT27 [ MEM ]
Gene Expression Viewer (FireBrowse)IFT27 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)11020
GTEX Portal (Tissue expression)IFT27
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BW83   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BW83  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BW83
Splice isoforms : SwissVarQ9BW83
PhosPhoSitePlusQ9BW83
Domaine pattern : Prosite (Expaxy)RAB (PS51419)   
Domains : Interpro (EBI)P-loop_NTPase    Small_GTP-bd_dom    Small_GTPase   
Domain families : Pfam (Sanger)Ras (PF00071)   
Domain families : Pfam (NCBI)pfam00071   
Conserved Domain (NCBI)IFT27
DMDM Disease mutations11020
Blocks (Seattle)IFT27
SuperfamilyQ9BW83
Human Protein AtlasENSG00000100360
Peptide AtlasQ9BW83
IPIIPI00872292   IPI00879146   IPI00878316   IPI00878082   IPI00878407   IPI00878639   
Protein Interaction databases
DIP (DOE-UCLA)Q9BW83
IntAct (EBI)Q9BW83
FunCoupENSG00000100360
BioGRIDIFT27
STRING (EMBL)IFT27
ZODIACIFT27
Ontologies - Pathways
QuickGOQ9BW83
Ontology : AmiGOprotein binding  GTP binding  centrosome  cilium  intracellular protein transport  intracellular protein transport  smoothened signaling pathway  small GTPase mediated signal transduction  membrane  intraciliary transport particle B  intraciliary transport particle B  motile cilium  intraciliary transport  intraciliary transport  primary cilium  sperm midpiece  sperm principal piece  ciliary tip  
Ontology : EGO-EBIprotein binding  GTP binding  centrosome  cilium  intracellular protein transport  intracellular protein transport  smoothened signaling pathway  small GTPase mediated signal transduction  membrane  intraciliary transport particle B  intraciliary transport particle B  motile cilium  intraciliary transport  intraciliary transport  primary cilium  sperm midpiece  sperm principal piece  ciliary tip  
NDEx NetworkIFT27
Atlas of Cancer Signalling NetworkIFT27
Wikipedia pathwaysIFT27
Orthology - Evolution
OrthoDB11020
GeneTree (enSembl)ENSG00000100360
Phylogenetic Trees/Animal Genes : TreeFamIFT27
HOVERGENQ9BW83
HOGENOMQ9BW83
Homologs : HomoloGeneIFT27
Homology/Alignments : Family Browser (UCSC)IFT27
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIFT27 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IFT27
dbVarIFT27
ClinVarIFT27
1000_GenomesIFT27 
Exome Variant ServerIFT27
ExAC (Exome Aggregation Consortium)IFT27 (select the gene name)
Genetic variants : HAPMAP11020
Genomic Variants (DGV)IFT27 [DGVbeta]
DECIPHER (Syndromes)22:37154246-37172177  ENSG00000100360
CONAN: Copy Number AnalysisIFT27 
Mutations
ICGC Data PortalIFT27 
TCGA Data PortalIFT27 
Broad Tumor PortalIFT27
OASIS PortalIFT27 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICIFT27  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDIFT27
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch IFT27
DgiDB (Drug Gene Interaction Database)IFT27
DoCM (Curated mutations)IFT27 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IFT27 (select a term)
intoGenIFT27
Cancer3DIFT27(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615870    615996   
Orphanet3244   
MedgenIFT27
Genetic Testing Registry IFT27
NextProtQ9BW83 [Medical]
TSGene11020
GENETestsIFT27
Huge Navigator IFT27 [HugePedia]
snp3D : Map Gene to Disease11020
BioCentury BCIQIFT27
ClinGenIFT27
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD11020
Chemical/Pharm GKB GenePA38609
Clinical trialIFT27
Miscellaneous
canSAR (ICR)IFT27 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineIFT27
EVEXIFT27
GoPubMedIFT27
iHOPIFT27
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:10:20 CET 2017

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