Atlas of Genetics and Cytogenetics in Oncology and Haematology


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IFT43 (intraflagellar transport 43)

Identity

Alias (NCBI)C14orf179
CED3
RP81
SRTD18
HGNC (Hugo) IFT43
HGNC Alias symbFLJ32173
MGC16028
HGNC Previous nameC14orf179
HGNC Previous namechromosome 14 open reading frame 179
 intraflagellar transport 43 homolog (Chlamydomonas)
LocusID (NCBI) 112752
Atlas_Id 64534
Location 14q24.3  [Link to chromosome band 14q24]
Location_base_pair Starts at 75985753 and ends at 76083749 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
EZR (6q25.3) / IFT43 (14q24.3)IFT43 (14q24.3) / TTLL5 (14q24.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  IFT43/TTLL5 (14q24)


External links

Nomenclature
HGNC (Hugo)IFT43   29669
Cards
Entrez_Gene (NCBI)IFT43  112752  intraflagellar transport 43
AliasesC14orf179; CED3; RP81; SRTD18
GeneCards (Weizmann)IFT43
Ensembl hg19 (Hinxton)ENSG00000119650 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000119650 [Gene_View]  ENSG00000119650 [Sequence]  chr14:75985753-76083749 [Contig_View]  IFT43 [Vega]
ICGC DataPortalENSG00000119650
TCGA cBioPortalIFT43
AceView (NCBI)IFT43
Genatlas (Paris)IFT43
WikiGenes112752
SOURCE (Princeton)IFT43
Genetics Home Reference (NIH)IFT43
Genomic and cartography
GoldenPath hg38 (UCSC)IFT43  -     chr14:75985753-76083749 +  14q24.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)IFT43  -     14q24.3   [Description]    (hg19-Feb_2009)
GoldenPathIFT43 - 14q24.3 [CytoView hg19]  IFT43 - 14q24.3 [CytoView hg38]
ImmunoBaseENSG00000119650
genome Data Viewer NCBIIFT43 [Mapview hg19]  
OMIM614068   614099   617866   617871   
Gene and transcription
Genbank (Entrez)AK056735 AK302944 AW235031 AW439039 BC010436
RefSeq transcript (Entrez)NM_001102564 NM_001255995 NM_052873
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)IFT43
Alternative Splicing GalleryENSG00000119650
Gene ExpressionIFT43 [ NCBI-GEO ]   IFT43 [ EBI - ARRAY_EXPRESS ]   IFT43 [ SEEK ]   IFT43 [ MEM ]
Gene Expression Viewer (FireBrowse)IFT43 [ Firebrowse - Broad ]
GenevisibleExpression of IFT43 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)112752
GTEX Portal (Tissue expression)IFT43
Human Protein AtlasENSG00000119650-IFT43 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96FT9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96FT9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96FT9
Splice isoforms : SwissVarQ96FT9
PhosPhoSitePlusQ96FT9
Domains : Interpro (EBI)IFT43   
Domain families : Pfam (Sanger)IFT43 (PF15305)   
Domain families : Pfam (NCBI)pfam15305   
Conserved Domain (NCBI)IFT43
DMDM Disease mutations112752
Blocks (Seattle)IFT43
SuperfamilyQ96FT9
Human Protein Atlas [tissue]ENSG00000119650-IFT43 [tissue]
Peptide AtlasQ96FT9
HPRD14449
IPIIPI00748602   IPI00798046   IPI00902611   IPI01026559   IPI01026215   
Protein Interaction databases
DIP (DOE-UCLA)Q96FT9
IntAct (EBI)Q96FT9
FunCoupENSG00000119650
BioGRIDIFT43
STRING (EMBL)IFT43
ZODIACIFT43
Ontologies - Pathways
QuickGOQ96FT9
Ontology : AmiGOprotein binding  cytoplasm  cilium  cilium  cilium  microtubule cytoskeleton  intraciliary transport particle A  centriolar satellite  intraciliary retrograde transport  intraciliary transport involved in cilium assembly  cilium assembly  ciliary tip  
Ontology : EGO-EBIprotein binding  cytoplasm  cilium  cilium  cilium  microtubule cytoskeleton  intraciliary transport particle A  centriolar satellite  intraciliary retrograde transport  intraciliary transport involved in cilium assembly  cilium assembly  ciliary tip  
NDEx NetworkIFT43
Atlas of Cancer Signalling NetworkIFT43
Wikipedia pathwaysIFT43
Orthology - Evolution
OrthoDB112752
GeneTree (enSembl)ENSG00000119650
Phylogenetic Trees/Animal Genes : TreeFamIFT43
HOGENOMQ96FT9
Homologs : HomoloGeneIFT43
Homology/Alignments : Family Browser (UCSC)IFT43
Gene fusions - Rearrangements
Fusion : QuiverIFT43
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIFT43 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IFT43
dbVarIFT43
ClinVarIFT43
1000_GenomesIFT43 
Exome Variant ServerIFT43
GNOMAD BrowserENSG00000119650
Varsome BrowserIFT43
Genetic variants : HAPMAP112752
Genomic Variants (DGV)IFT43 [DGVbeta]
DECIPHERIFT43 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisIFT43 
Mutations
ICGC Data PortalIFT43 
TCGA Data PortalIFT43 
Broad Tumor PortalIFT43
OASIS PortalIFT43 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICIFT43  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DIFT43
Mutations and Diseases : HGMDIFT43
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch IFT43
DgiDB (Drug Gene Interaction Database)IFT43
DoCM (Curated mutations)IFT43 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IFT43 (select a term)
intoGenIFT43
Cancer3DIFT43(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614068    614099    617866    617871   
Orphanet1682   
DisGeNETIFT43
MedgenIFT43
Genetic Testing Registry IFT43
NextProtQ96FT9 [Medical]
TSGene112752
GENETestsIFT43
Target ValidationIFT43
Huge Navigator IFT43 [HugePedia]
snp3D : Map Gene to Disease112752
BioCentury BCIQIFT43
ClinGenIFT43
Clinical trials, drugs, therapy
Protein Interactions : CTD112752
Pharm GKB GenePA145149677
Clinical trialIFT43
Miscellaneous
canSAR (ICR)IFT43 (select the gene name)
HarmonizomeIFT43
DataMed IndexIFT43
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineIFT43
EVEXIFT43
GoPubMedIFT43
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Jul 16 15:58:52 CEST 2020

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