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IFT43 (intraflagellar transport 43)

Identity

Alias_namesC14orf179
chromosome 14 open reading frame 179
intraflagellar transport 43 homolog (Chlamydomonas)
Alias_symbol (synonym)FLJ32173
MGC16028
Other aliasCED3
HGNC (Hugo) IFT43
LocusID (NCBI) 112752
Atlas_Id 64534
Location 14q24.3  [Link to chromosome band 14q24]
Location_base_pair Starts at 75985753 and ends at 76083749 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
EZR (6q25.3) / IFT43 (14q24.3)IFT43 (14q24.3) / TTLL5 (14q24.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)IFT43   29669
Cards
Entrez_Gene (NCBI)IFT43  112752  intraflagellar transport 43
AliasesC14orf179; CED3
GeneCards (Weizmann)IFT43
Ensembl hg19 (Hinxton)ENSG00000119650 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000119650 [Gene_View]  chr14:75985753-76083749 [Contig_View]  IFT43 [Vega]
ICGC DataPortalENSG00000119650
TCGA cBioPortalIFT43
AceView (NCBI)IFT43
Genatlas (Paris)IFT43
WikiGenes112752
SOURCE (Princeton)IFT43
Genetics Home Reference (NIH)IFT43
Genomic and cartography
GoldenPath hg38 (UCSC)IFT43  -     chr14:75985753-76083749 +  14q24.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)IFT43  -     14q24.3   [Description]    (hg19-Feb_2009)
EnsemblIFT43 - 14q24.3 [CytoView hg19]  IFT43 - 14q24.3 [CytoView hg38]
Mapping of homologs : NCBIIFT43 [Mapview hg19]  IFT43 [Mapview hg38]
OMIM614068   614099   
Gene and transcription
Genbank (Entrez)AK056735 AK302944 AW235031 AW439039 BC010436
RefSeq transcript (Entrez)NM_001102564 NM_001255995 NM_052873
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)IFT43
Cluster EST : UnigeneHs.532626 [ NCBI ]
CGAP (NCI)Hs.532626
Alternative Splicing GalleryENSG00000119650
Gene ExpressionIFT43 [ NCBI-GEO ]   IFT43 [ EBI - ARRAY_EXPRESS ]   IFT43 [ SEEK ]   IFT43 [ MEM ]
Gene Expression Viewer (FireBrowse)IFT43 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)112752
GTEX Portal (Tissue expression)IFT43
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96FT9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96FT9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96FT9
Splice isoforms : SwissVarQ96FT9
PhosPhoSitePlusQ96FT9
Domains : Interpro (EBI)IFT43   
Domain families : Pfam (Sanger)IFT43 (PF15305)   
Domain families : Pfam (NCBI)pfam15305   
Conserved Domain (NCBI)IFT43
DMDM Disease mutations112752
Blocks (Seattle)IFT43
SuperfamilyQ96FT9
Human Protein AtlasENSG00000119650
Peptide AtlasQ96FT9
HPRD14449
IPIIPI00748602   IPI00798046   IPI00902611   IPI01026559   IPI01026215   
Protein Interaction databases
DIP (DOE-UCLA)Q96FT9
IntAct (EBI)Q96FT9
FunCoupENSG00000119650
BioGRIDIFT43
STRING (EMBL)IFT43
ZODIACIFT43
Ontologies - Pathways
QuickGOQ96FT9
Ontology : AmiGOprotein binding  cytoplasm  microtubule organizing center  cilium  cilium  microtubule cytoskeleton  intraciliary transport particle A  intraciliary retrograde transport  intraciliary transport involved in cilium assembly  cilium assembly  ciliary tip  
Ontology : EGO-EBIprotein binding  cytoplasm  microtubule organizing center  cilium  cilium  microtubule cytoskeleton  intraciliary transport particle A  intraciliary retrograde transport  intraciliary transport involved in cilium assembly  cilium assembly  ciliary tip  
NDEx NetworkIFT43
Atlas of Cancer Signalling NetworkIFT43
Wikipedia pathwaysIFT43
Orthology - Evolution
OrthoDB112752
GeneTree (enSembl)ENSG00000119650
Phylogenetic Trees/Animal Genes : TreeFamIFT43
HOVERGENQ96FT9
HOGENOMQ96FT9
Homologs : HomoloGeneIFT43
Homology/Alignments : Family Browser (UCSC)IFT43
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIFT43 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IFT43
dbVarIFT43
ClinVarIFT43
1000_GenomesIFT43 
Exome Variant ServerIFT43
ExAC (Exome Aggregation Consortium)IFT43 (select the gene name)
Genetic variants : HAPMAP112752
Genomic Variants (DGV)IFT43 [DGVbeta]
DECIPHERIFT43 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisIFT43 
Mutations
ICGC Data PortalIFT43 
TCGA Data PortalIFT43 
Broad Tumor PortalIFT43
OASIS PortalIFT43 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICIFT43  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDIFT43
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch IFT43
DgiDB (Drug Gene Interaction Database)IFT43
DoCM (Curated mutations)IFT43 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IFT43 (select a term)
intoGenIFT43
Cancer3DIFT43(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614068    614099   
Orphanet1682   
MedgenIFT43
Genetic Testing Registry IFT43
NextProtQ96FT9 [Medical]
TSGene112752
GENETestsIFT43
Target ValidationIFT43
Huge Navigator IFT43 [HugePedia]
snp3D : Map Gene to Disease112752
BioCentury BCIQIFT43
ClinGenIFT43
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD112752
Chemical/Pharm GKB GenePA145149677
Clinical trialIFT43
Miscellaneous
canSAR (ICR)IFT43 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineIFT43
EVEXIFT43
GoPubMedIFT43
iHOPIFT43
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:11:01 CEST 2017

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