Atlas of Genetics and Cytogenetics in Oncology and Haematology


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IFT46 (intraflagellar transport 46)

Identity

Alias_namesC11orf60
chromosome 11 open reading frame 60
intraflagellar transport 46 homolog (Chlamydomonas)
Alias_symbol (synonym)C11orf2
FLJ21827
CFAP32
Other alias
HGNC (Hugo) IFT46
LocusID (NCBI) 56912
Atlas_Id 64535
Location 11q23.3  [Link to chromosome band 11q23]
Location_base_pair Starts at 118544528 and ends at 118566076 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
EIF4G2 (11p15.3) / IFT46 (11q23.3)IARS (9q22.31) / IFT46 (11q23.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)IFT46   26146
Cards
Entrez_Gene (NCBI)IFT46  56912  intraflagellar transport 46
AliasesC11orf2; C11orf60; CFAP32
GeneCards (Weizmann)IFT46
Ensembl hg19 (Hinxton)ENSG00000118096 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000118096 [Gene_View]  chr11:118544528-118566076 [Contig_View]  IFT46 [Vega]
ICGC DataPortalENSG00000118096
TCGA cBioPortalIFT46
AceView (NCBI)IFT46
Genatlas (Paris)IFT46
WikiGenes56912
SOURCE (Princeton)IFT46
Genetics Home Reference (NIH)IFT46
Genomic and cartography
GoldenPath hg38 (UCSC)IFT46  -     chr11:118544528-118566076 -  11q23.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)IFT46  -     11q23.3   [Description]    (hg19-Feb_2009)
EnsemblIFT46 - 11q23.3 [CytoView hg19]  IFT46 - 11q23.3 [CytoView hg38]
Mapping of homologs : NCBIIFT46 [Mapview hg19]  IFT46 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AJ249980 AK025480 AK289521 AL136934 AM393030
RefSeq transcript (Entrez)NM_001168618 NM_020153
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)IFT46
Cluster EST : UnigeneHs.533738 [ NCBI ]
CGAP (NCI)Hs.533738
Alternative Splicing GalleryENSG00000118096
Gene ExpressionIFT46 [ NCBI-GEO ]   IFT46 [ EBI - ARRAY_EXPRESS ]   IFT46 [ SEEK ]   IFT46 [ MEM ]
Gene Expression Viewer (FireBrowse)IFT46 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56912
GTEX Portal (Tissue expression)IFT46
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NQC8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NQC8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NQC8
Splice isoforms : SwissVarQ9NQC8
PhosPhoSitePlusQ9NQC8
Domains : Interpro (EBI)Intraflagellar_transp_cmplxB   
Domain families : Pfam (Sanger)IFT46_B_C (PF12317)   
Domain families : Pfam (NCBI)pfam12317   
Conserved Domain (NCBI)IFT46
DMDM Disease mutations56912
Blocks (Seattle)IFT46
SuperfamilyQ9NQC8
Human Protein AtlasENSG00000118096
Peptide AtlasQ9NQC8
HPRD07967
IPIIPI00160349   IPI00016335   IPI00983826   IPI00981053   IPI00985061   IPI00983059   IPI00984409   IPI00981717   
Protein Interaction databases
DIP (DOE-UCLA)Q9NQC8
IntAct (EBI)Q9NQC8
FunCoupENSG00000118096
BioGRIDIFT46
STRING (EMBL)IFT46
ZODIACIFT46
Ontologies - Pathways
QuickGOQ9NQC8
Ontology : AmiGOmolecular_function  cytoplasm  centrosome  cilium  cilium  smoothened signaling pathway  protein C-terminus binding  biological_process  intraciliary transport particle B  intraciliary transport particle B  motile cilium  intraciliary transport involved in cilium assembly  ciliary basal body  intraciliary transport  intraciliary transport  protein stabilization  cilium assembly  cilium assembly  ciliary tip  
Ontology : EGO-EBImolecular_function  cytoplasm  centrosome  cilium  cilium  smoothened signaling pathway  protein C-terminus binding  biological_process  intraciliary transport particle B  intraciliary transport particle B  motile cilium  intraciliary transport involved in cilium assembly  ciliary basal body  intraciliary transport  intraciliary transport  protein stabilization  cilium assembly  cilium assembly  ciliary tip  
NDEx NetworkIFT46
Atlas of Cancer Signalling NetworkIFT46
Wikipedia pathwaysIFT46
Orthology - Evolution
OrthoDB56912
GeneTree (enSembl)ENSG00000118096
Phylogenetic Trees/Animal Genes : TreeFamIFT46
HOVERGENQ9NQC8
HOGENOMQ9NQC8
Homologs : HomoloGeneIFT46
Homology/Alignments : Family Browser (UCSC)IFT46
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIFT46 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IFT46
dbVarIFT46
ClinVarIFT46
1000_GenomesIFT46 
Exome Variant ServerIFT46
ExAC (Exome Aggregation Consortium)IFT46 (select the gene name)
Genetic variants : HAPMAP56912
Genomic Variants (DGV)IFT46 [DGVbeta]
DECIPHERIFT46 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisIFT46 
Mutations
ICGC Data PortalIFT46 
TCGA Data PortalIFT46 
Broad Tumor PortalIFT46
OASIS PortalIFT46 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICIFT46  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDIFT46
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch IFT46
DgiDB (Drug Gene Interaction Database)IFT46
DoCM (Curated mutations)IFT46 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IFT46 (select a term)
intoGenIFT46
Cancer3DIFT46(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenIFT46
Genetic Testing Registry IFT46
NextProtQ9NQC8 [Medical]
TSGene56912
GENETestsIFT46
Target ValidationIFT46
Huge Navigator IFT46 [HugePedia]
snp3D : Map Gene to Disease56912
BioCentury BCIQIFT46
ClinGenIFT46
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56912
Chemical/Pharm GKB GenePA165543409
Clinical trialIFT46
Miscellaneous
canSAR (ICR)IFT46 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineIFT46
EVEXIFT46
GoPubMedIFT46
iHOPIFT46
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:11:01 CEST 2017

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