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IFT52 (intraflagellar transport 52)

Identity

Alias (NCBI)C20orf9
CGI-53
NGD2
NGD5
HGNC (Hugo) IFT52
HGNC Alias symbCGI-53
NGD5
dJ1028D15.1
NGD2
HGNC Previous nameC20orf9
HGNC Previous namechromosome 20 open reading frame 9
 intraflagellar transport 52 homolog (Chlamydomonas)
LocusID (NCBI) 51098
Atlas_Id 56439
Location 20q13.12  [Link to chromosome band 20q13]
Location_base_pair Starts at 43590937 and ends at 43647299 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
FUT8 (14q23.3) / IFT52 (20q13.12)IFT52 (20q13.12) / IFT52 (20q13.12)TRIO (5p15.2) / IFT52 (20q13.12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)IFT52   15901
Cards
Entrez_Gene (NCBI)IFT52    intraflagellar transport 52
AliasesC20orf9; CGI-53; NGD2; NGD5
GeneCards (Weizmann)IFT52
Ensembl hg19 (Hinxton)ENSG00000101052 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000101052 [Gene_View]  ENSG00000101052 [Sequence]  chr20:43590937-43647299 [Contig_View]  IFT52 [Vega]
ICGC DataPortalENSG00000101052
TCGA cBioPortalIFT52
AceView (NCBI)IFT52
Genatlas (Paris)IFT52
SOURCE (Princeton)IFT52
Genetics Home Reference (NIH)IFT52
Genomic and cartography
GoldenPath hg38 (UCSC)IFT52  -     chr20:43590937-43647299 +  20q13.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)IFT52  -     20q13.12   [Description]    (hg19-Feb_2009)
GoldenPathIFT52 - 20q13.12 [CytoView hg19]  IFT52 - 20q13.12 [CytoView hg38]
ImmunoBaseENSG00000101052
Genome Data Viewer NCBIIFT52 [Mapview hg19]  
OMIM617094   617102   
Gene and transcription
Genbank (Entrez)AF151811 AI819589 AK001436 AK097603 AK301915
RefSeq transcript (Entrez)NM_001303458 NM_001303459 NM_001323578 NM_001323579 NM_001323580 NM_001323581 NM_016004
Consensus coding sequences : CCDS (NCBI)IFT52
Gene ExpressionIFT52 [ NCBI-GEO ]   IFT52 [ EBI - ARRAY_EXPRESS ]   IFT52 [ SEEK ]   IFT52 [ MEM ]
Gene Expression Viewer (FireBrowse)IFT52 [ Firebrowse - Broad ]
GenevisibleExpression of IFT52 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51098
GTEX Portal (Tissue expression)IFT52
Human Protein AtlasENSG00000101052-IFT52 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y366   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y366  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y366
PhosPhoSitePlusQ9Y366
Domains : Interpro (EBI)ABC_transp_unknown    IFT52   
Domain families : Pfam (Sanger)ABC_transp_aux (PF09822)   
Domain families : Pfam (NCBI)pfam09822   
Conserved Domain (NCBI)IFT52
SuperfamilyQ9Y366
AlphaFold pdb e-kbQ9Y366   
Human Protein Atlas [tissue]ENSG00000101052-IFT52 [tissue]
HPRD12789
Protein Interaction databases
DIP (DOE-UCLA)Q9Y366
IntAct (EBI)Q9Y366
BioGRIDIFT52
STRING (EMBL)IFT52
ZODIACIFT52
Ontologies - Pathways
QuickGOQ9Y366
Ontology : AmiGOneural tube formation  heart looping  centrosome  centriole  cilium  cilium  smoothened signaling pathway  protein C-terminus binding  dorsal/ventral pattern formation  intraciliary transport particle B  intraciliary transport particle B  motile cilium  photoreceptor connecting cilium  intraciliary anterograde transport  intraciliary transport involved in cilium assembly  ciliary basal body  intraciliary transport  embryonic digit morphogenesis  dendrite terminus  negative regulation of epithelial cell proliferation  cilium assembly  cilium assembly  regulation of protein processing  ciliary tip  ciliary base  non-motile cilium assembly  
Ontology : EGO-EBIneural tube formation  heart looping  centrosome  centriole  cilium  cilium  smoothened signaling pathway  protein C-terminus binding  dorsal/ventral pattern formation  intraciliary transport particle B  intraciliary transport particle B  motile cilium  photoreceptor connecting cilium  intraciliary anterograde transport  intraciliary transport involved in cilium assembly  ciliary basal body  intraciliary transport  embryonic digit morphogenesis  dendrite terminus  negative regulation of epithelial cell proliferation  cilium assembly  cilium assembly  regulation of protein processing  ciliary tip  ciliary base  non-motile cilium assembly  
NDEx NetworkIFT52
Atlas of Cancer Signalling NetworkIFT52
Wikipedia pathwaysIFT52
Orthology - Evolution
OrthoDB51098
GeneTree (enSembl)ENSG00000101052
Phylogenetic Trees/Animal Genes : TreeFamIFT52
Homologs : HomoloGeneIFT52
Homology/Alignments : Family Browser (UCSC)IFT52
Gene fusions - Rearrangements
Fusion : QuiverIFT52
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIFT52 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IFT52
dbVarIFT52
ClinVarIFT52
MonarchIFT52
1000_GenomesIFT52 
Exome Variant ServerIFT52
GNOMAD BrowserENSG00000101052
Varsome BrowserIFT52
ACMGIFT52 variants
VarityQ9Y366
Genomic Variants (DGV)IFT52 [DGVbeta]
DECIPHERIFT52 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisIFT52 
Mutations
ICGC Data PortalIFT52 
TCGA Data PortalIFT52 
Broad Tumor PortalIFT52
OASIS PortalIFT52 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICIFT52  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DIFT52
Mutations and Diseases : HGMDIFT52
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaIFT52
DgiDB (Drug Gene Interaction Database)IFT52
DoCM (Curated mutations)IFT52
CIViC (Clinical Interpretations of Variants in Cancer)IFT52
Cancer3DIFT52
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617094    617102   
Orphanet
DisGeNETIFT52
MedgenIFT52
Genetic Testing Registry IFT52
NextProtQ9Y366 [Medical]
GENETestsIFT52
Target ValidationIFT52
Huge Navigator IFT52 [HugePedia]
ClinGenIFT52
Clinical trials, drugs, therapy
MyCancerGenomeIFT52
Protein Interactions : CTDIFT52
Pharm GKB GenePA25796
PharosQ9Y366
Clinical trialIFT52
Miscellaneous
canSAR (ICR)IFT52
HarmonizomeIFT52
DataMed IndexIFT52
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXIFT52
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:13:30 CEST 2021

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