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IFT80 (intraflagellar transport 80)

Identity

Alias_namesWDR56
WD repeat domain 56
intraflagellar transport 80 homolog (Chlamydomonas)
Alias_symbol (synonym)KIAA1374
Other aliasATD2
SRTD2
HGNC (Hugo) IFT80
LocusID (NCBI) 57560
Atlas_Id 56187
Location 3q25.33  [Link to chromosome band 3q25]
Location_base_pair Starts at 159974774 and ends at 160117320 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
IFT80 (3q25.33) / MAST4 (5q12.3)IFT80 (3q25.33) / TP73 (1p36.32)RIF1 (2q23.3) / IFT80 (3q25.33)
TRIM59 (3q25.33) / IFT80 (3q25.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)IFT80   29262
Cards
Entrez_Gene (NCBI)IFT80  57560  intraflagellar transport 80
AliasesATD2; SRTD2; WDR56
GeneCards (Weizmann)IFT80
Ensembl hg19 (Hinxton)ENSG00000068885 [Gene_View]  chr3:159974774-160117320 [Contig_View]  IFT80 [Vega]
Ensembl hg38 (Hinxton)ENSG00000068885 [Gene_View]  chr3:159974774-160117320 [Contig_View]  IFT80 [Vega]
ICGC DataPortalENSG00000068885
TCGA cBioPortalIFT80
AceView (NCBI)IFT80
Genatlas (Paris)IFT80
WikiGenes57560
SOURCE (Princeton)IFT80
Genetics Home Reference (NIH)IFT80
Genomic and cartography
GoldenPath hg19 (UCSC)IFT80  -     chr3:159974774-160117320 -  3q25.33   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)IFT80  -     3q25.33   [Description]    (hg38-Dec_2013)
EnsemblIFT80 - 3q25.33 [CytoView hg19]  IFT80 - 3q25.33 [CytoView hg38]
Mapping of homologs : NCBIIFT80 [Mapview hg19]  IFT80 [Mapview hg38]
OMIM611177   611263   
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001190241 NM_001190242 NM_020800
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)IFT80
Cluster EST : UnigeneHs.478095 [ NCBI ]
CGAP (NCI)Hs.478095
Alternative Splicing GalleryENSG00000068885
Gene ExpressionIFT80 [ NCBI-GEO ]   IFT80 [ EBI - ARRAY_EXPRESS ]   IFT80 [ SEEK ]   IFT80 [ MEM ]
Gene Expression Viewer (FireBrowse)IFT80 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57560
GTEX Portal (Tissue expression)IFT80
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9P2H3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9P2H3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9P2H3
Splice isoforms : SwissVarQ9P2H3
PhosPhoSitePlusQ9P2H3
Domaine pattern : Prosite (Expaxy)WD_REPEATS_2 (PS50082)    WD_REPEATS_REGION (PS50294)   
Domains : Interpro (EBI)WD40/YVTN_repeat-like_dom    WD40_repeat    WD40_repeat_dom   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)WD40 (SM00320)  
Conserved Domain (NCBI)IFT80
DMDM Disease mutations57560
Blocks (Seattle)IFT80
SuperfamilyQ9P2H3
Human Protein AtlasENSG00000068885
Peptide AtlasQ9P2H3
HPRD13853
IPIIPI00175647   IPI00946083   IPI00946231   IPI00946403   IPI00946296   IPI00947030   IPI00945556   IPI00945192   IPI00947524   IPI00947260   IPI00946810   IPI00946547   IPI00792392   
Protein Interaction databases
DIP (DOE-UCLA)Q9P2H3
IntAct (EBI)Q9P2H3
FunCoupENSG00000068885
BioGRIDIFT80
STRING (EMBL)IFT80
ZODIACIFT80
Ontologies - Pathways
QuickGOQ9P2H3
Ontology : AmiGOosteoblast differentiation  chondrocyte differentiation  cytoplasm  centrosome  cilium  smoothened signaling pathway  intraciliary transport particle B  intraciliary transport particle B  nonmotile primary cilium assembly  cilium assembly  positive regulation of smoothened signaling pathway  negative regulation of epithelial cell proliferation  bone morphogenesis  primary cilium  ciliary tip  negative regulation of non-canonical Wnt signaling pathway  
Ontology : EGO-EBIosteoblast differentiation  chondrocyte differentiation  cytoplasm  centrosome  cilium  smoothened signaling pathway  intraciliary transport particle B  intraciliary transport particle B  nonmotile primary cilium assembly  cilium assembly  positive regulation of smoothened signaling pathway  negative regulation of epithelial cell proliferation  bone morphogenesis  primary cilium  ciliary tip  negative regulation of non-canonical Wnt signaling pathway  
NDEx NetworkIFT80
Atlas of Cancer Signalling NetworkIFT80
Wikipedia pathwaysIFT80
Orthology - Evolution
OrthoDB57560
GeneTree (enSembl)ENSG00000068885
Phylogenetic Trees/Animal Genes : TreeFamIFT80
HOVERGENQ9P2H3
HOGENOMQ9P2H3
Homologs : HomoloGeneIFT80
Homology/Alignments : Family Browser (UCSC)IFT80
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIFT80 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IFT80
dbVarIFT80
ClinVarIFT80
1000_GenomesIFT80 
Exome Variant ServerIFT80
ExAC (Exome Aggregation Consortium)IFT80 (select the gene name)
Genetic variants : HAPMAP57560
Genomic Variants (DGV)IFT80 [DGVbeta]
DECIPHER (Syndromes)3:159974774-160117320  ENSG00000068885
CONAN: Copy Number AnalysisIFT80 
Mutations
ICGC Data PortalIFT80 
TCGA Data PortalIFT80 
Broad Tumor PortalIFT80
OASIS PortalIFT80 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICIFT80  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDIFT80
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch IFT80
DgiDB (Drug Gene Interaction Database)IFT80
DoCM (Curated mutations)IFT80 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IFT80 (select a term)
intoGenIFT80
Cancer3DIFT80(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611177    611263   
Orphanet283    12214   
MedgenIFT80
Genetic Testing Registry IFT80
NextProtQ9P2H3 [Medical]
TSGene57560
GENETestsIFT80
Huge Navigator IFT80 [HugePedia]
snp3D : Map Gene to Disease57560
BioCentury BCIQIFT80
ClinGenIFT80
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57560
Chemical/Pharm GKB GenePA142671664
Clinical trialIFT80
Miscellaneous
canSAR (ICR)IFT80 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineIFT80
EVEXIFT80
GoPubMedIFT80
iHOPIFT80
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:10:21 CET 2017

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