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IFT81 (intraflagellar transport 81)

Identity

Alias_namesCDV1
carnitine deficiency-associated, expressed in ventricle 1
intraflagellar transport 81 homolog (Chlamydomonas)
Alias_symbol (synonym)CDV-1R
MGC4027
Other aliasCDV-1
CDV1R
DV1
HGNC (Hugo) IFT81
LocusID (NCBI) 28981
Atlas_Id 40042
Location 12q24.11  [Link to chromosome band 12q24]
Location_base_pair Starts at 110124335 and ends at 110218795 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ATP2A2 (12q24.11) / IFT81 (12q24.11)IFT81 (12q24.11) / ACACB (12q24.11)IFT81 (12q24.11) / HECTD4 (12q24.13)
IFT81 (12q24.11) / PRKAA1 (5p13.1)ATP2A2 12q24.11 / IFT81 12q24.11IFT81 12q24.11 / ACACB 12q24.11

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)IFT81   14313
Cards
Entrez_Gene (NCBI)IFT81  28981  intraflagellar transport 81
AliasesCDV-1; CDV-1R; CDV1; CDV1R; 
DV1
GeneCards (Weizmann)IFT81
Ensembl hg19 (Hinxton)ENSG00000122970 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000122970 [Gene_View]  chr12:110124335-110218795 [Contig_View]  IFT81 [Vega]
ICGC DataPortalENSG00000122970
TCGA cBioPortalIFT81
AceView (NCBI)IFT81
Genatlas (Paris)IFT81
WikiGenes28981
SOURCE (Princeton)IFT81
Genetics Home Reference (NIH)IFT81
Genomic and cartography
GoldenPath hg38 (UCSC)IFT81  -     chr12:110124335-110218795 +  12q24.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)IFT81  -     12q24.11   [Description]    (hg19-Feb_2009)
EnsemblIFT81 - 12q24.11 [CytoView hg19]  IFT81 - 12q24.11 [CytoView hg38]
Mapping of homologs : NCBIIFT81 [Mapview hg19]  IFT81 [Mapview hg38]
OMIM605489   
Gene and transcription
Genbank (Entrez)AF078932 AF139540 AF250326 AF332010 AK000874
RefSeq transcript (Entrez)NM_001143779 NM_001347946 NM_001347947 NM_001347948 NM_014055 NM_031473
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)IFT81
Cluster EST : UnigeneHs.528382 [ NCBI ]
CGAP (NCI)Hs.528382
Alternative Splicing GalleryENSG00000122970
Gene ExpressionIFT81 [ NCBI-GEO ]   IFT81 [ EBI - ARRAY_EXPRESS ]   IFT81 [ SEEK ]   IFT81 [ MEM ]
Gene Expression Viewer (FireBrowse)IFT81 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)28981
GTEX Portal (Tissue expression)IFT81
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WYA0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WYA0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WYA0
Splice isoforms : SwissVarQ8WYA0
PhosPhoSitePlusQ8WYA0
Domains : Interpro (EBI)IFT81   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)IFT81
DMDM Disease mutations28981
Blocks (Seattle)IFT81
SuperfamilyQ8WYA0
Human Protein AtlasENSG00000122970
Peptide AtlasQ8WYA0
HPRD09266
IPIIPI00165189   IPI00027818   IPI00759494   IPI01022567   IPI01022453   IPI01022130   
Protein Interaction databases
DIP (DOE-UCLA)Q8WYA0
IntAct (EBI)Q8WYA0
FunCoupENSG00000122970
BioGRIDIFT81
STRING (EMBL)IFT81
ZODIACIFT81
Ontologies - Pathways
QuickGOQ8WYA0
Ontology : AmiGOcentrosome  cilium  spermatogenesis  tubulin binding  intraciliary transport particle B  intraciliary transport particle B  motile cilium  intraciliary transport involved in cilium assembly  intraciliary transport involved in cilium assembly  ciliary basal body  cilium assembly  sperm midpiece  sperm principal piece  ciliary tip  
Ontology : EGO-EBIcentrosome  cilium  spermatogenesis  tubulin binding  intraciliary transport particle B  intraciliary transport particle B  motile cilium  intraciliary transport involved in cilium assembly  intraciliary transport involved in cilium assembly  ciliary basal body  cilium assembly  sperm midpiece  sperm principal piece  ciliary tip  
NDEx NetworkIFT81
Atlas of Cancer Signalling NetworkIFT81
Wikipedia pathwaysIFT81
Orthology - Evolution
OrthoDB28981
GeneTree (enSembl)ENSG00000122970
Phylogenetic Trees/Animal Genes : TreeFamIFT81
HOVERGENQ8WYA0
HOGENOMQ8WYA0
Homologs : HomoloGeneIFT81
Homology/Alignments : Family Browser (UCSC)IFT81
Gene fusions - Rearrangements
Fusion : MitelmanATP2A2/IFT81 [12q24.11/12q24.11]  [t(12;12)(q24;q24)]  
Fusion : MitelmanIFT81/ACACB [12q24.11/12q24.11]  [t(12;12)(q24;q24)]  
Fusion : MitelmanIFT81/HECTD4 [12q24.11/12q24.13]  [inv(12)(q24q24)]  
Fusion: TCGAATP2A2 12q24.11 IFT81 12q24.11 LUAD
Fusion: TCGAIFT81 12q24.11 ACACB 12q24.11 PRAD
Fusion Cancer (Beijing)ATP2A2 [12q24.11]  -  IFT81 [12q24.11]  [FUSC003416]  [FUSC003416]
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIFT81 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IFT81
dbVarIFT81
ClinVarIFT81
1000_GenomesIFT81 
Exome Variant ServerIFT81
ExAC (Exome Aggregation Consortium)IFT81 (select the gene name)
Genetic variants : HAPMAP28981
Genomic Variants (DGV)IFT81 [DGVbeta]
DECIPHERIFT81 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisIFT81 
Mutations
ICGC Data PortalIFT81 
TCGA Data PortalIFT81 
Broad Tumor PortalIFT81
OASIS PortalIFT81 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICIFT81  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDIFT81
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch IFT81
DgiDB (Drug Gene Interaction Database)IFT81
DoCM (Curated mutations)IFT81 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IFT81 (select a term)
intoGenIFT81
Cancer3DIFT81(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605489   
Orphanet
MedgenIFT81
Genetic Testing Registry IFT81
NextProtQ8WYA0 [Medical]
TSGene28981
GENETestsIFT81
Huge Navigator IFT81 [HugePedia]
snp3D : Map Gene to Disease28981
BioCentury BCIQIFT81
ClinGenIFT81
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD28981
Chemical/Pharm GKB GenePA26349
Clinical trialIFT81
Miscellaneous
canSAR (ICR)IFT81 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineIFT81
EVEXIFT81
GoPubMedIFT81
iHOPIFT81
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:20:03 CEST 2017

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