IFT88 (intraflagellar transport 88 homolog (Chlamydomonas))

Identity

Other names	D13S1056E
	DAF19
	MGC26259
	RP11-172H24.2
	TG737
	TTC10
	hTg737
HGNC	IFT88
Location	13q12.1
Note	Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

External links

	Nomenclature
HGNC	IFT88   20606
Entrez_Gene	IFT88  8100  intraflagellar transport 88 homolog (Chlamydomonas)
	Cards
GeneCards	IFT88
Ensembl	IFT88 [Search_View]   ENSG00000032742 [Gene_View]
Genatlas	IFT88
GeneLynx	IFT88
eGenome	IFT88
euGene	8100
	Genomic and cartography
GoldenPath	IFT88  -  13q12.1   chr13:20039208-20163576 +  13q12.11   [Description]    (hg18-March_2006)
Ensembl	IFT88 - 13q12.11 [CytoView]
NCBI	Mapview
OMIM	Disease map [OMIM]
HomoloGene	IFT88
	Gene and transcription
Genbank	AK058172 [ ENTREZ ]
Genbank	AK126668 [ ENTREZ ]
Genbank	AK300769 [ ENTREZ ]
Genbank	AK308281 [ ENTREZ ]
Genbank	AK310223 [ ENTREZ ]
RefSeq	NM_006531 [ SRS ]    NM_006531 [ ENTREZ ]
RefSeq	NM_175605 [ SRS ]    NM_175605 [ ENTREZ ]
RefSeq	AC_000056 [ SRS ]    AC_000056 [ ENTREZ ]
RefSeq	AC_000145 [ SRS ]    AC_000145 [ ENTREZ ]
RefSeq	NC_000013 [ SRS ]    NC_000013 [ ENTREZ ]
RefSeq	NT_024524 [ SRS ]    NT_024524 [ ENTREZ ]
RefSeq	NW_001838069 [ SRS ]    NW_001838069 [ ENTREZ ]
RefSeq	NW_925473 [ SRS ]    NW_925473 [ ENTREZ ]
AceView	IFT88 AceView - NCBI
Unigene	Hs.187376 [ SRS ]    Hs.187376 [ NCBI ]     HS187376 [ spliceNest ]
Fast-db	427 (alternative variants)
	Protein : pattern, domain, 3D structure
SwissProt	Q13099 [ SRS]    Q13099 [ EXPASY ]     Q13099 [ INTERPRO ]     Q13099 [ UNIPROT ]
Prosite	PS50005 TPR [ SRS ]    PS50005 TPR [ Expasy ]
Prosite	PS50293 TPR_REGION [ SRS ]    PS50293 TPR_REGION [ Expasy ]
Interpro	IPR006597 Sel1_like [ SRS ]    IPR006597 Sel1_like [ EBI ]
Interpro	IPR001440 TPR-1 [ SRS ]    IPR001440 TPR-1 [ EBI ]
Interpro	IPR011990 TPR-like_helical [ SRS ]    IPR011990 TPR-like_helical [ EBI ]
Interpro	IPR013026 TPR_region [ SRS ]    IPR013026 TPR_region [ EBI ]
CluSTr	Q13099
Pfam	PF00515 TPR_1 [ SRS ]    PF00515 TPR_1 [ Sanger ]    pfam00515 [ NCBI-CDD ]
Smart	SM00671 SEL1 [EMBL]
Smart	SM00028 TPR [EMBL]
Blocks	Q13099
HPRD	09000
	Protein Interaction databases
DIP	Q13099
IntAct	Q13099
	Polymorphism : SNP, mutations, diseases
OMIM	600595    [ map ]
GENECLINICS	600595
SNP	IFT88 [dbSNP-NCBI]
SNP	NM_006531 [SNP-NCI]
SNP	NM_175605 [SNP-NCI]
SNP	IFT88 [GeneSNPs - Utah]  IFT88] [HGBASE - SRS]
HAPMAP	IFT88 [HAPMAP]
HGMD	IFT88
	General knowledge
Family Browser	IFT88 [UCSC Family Browser]
SOURCE	NM_006531
SOURCE	NM_175605
SMD	Hs.187376
SAGE	Hs.187376
GO	binding [Amigo]  binding
GO	protein binding [Amigo]  protein binding
GO	axoneme [Amigo]  axoneme
GO	basal body [Amigo]  basal body
GO	smoothened signaling pathway [Amigo]  smoothened signaling pathway
GO	determination of left/right symmetry [Amigo]  determination of left/right symmetry
GO	excretion [Amigo]  excretion
GO	organ morphogenesis [Amigo]  organ morphogenesis
GO	anterior/posterior pattern formation [Amigo]  anterior/posterior pattern formation
GO	dorsal/ventral pattern formation [Amigo]  dorsal/ventral pattern formation
GO	flagellum [Amigo]  flagellum
GO	regulation of odontogenesis of dentine-containing tooth [Amigo]  regulation of odontogenesis of dentine-containing tooth
GO	embryonic digit morphogenesis [Amigo]  embryonic digit morphogenesis
GO	positive regulation of proteolysis [Amigo]  positive regulation of proteolysis
GO	embryonic morphogenesis [Amigo]  embryonic morphogenesis
PubGene	IFT88
TreeFam	IFT88
CTD	8100 [Comparative ToxicoGenomics Database]
	Other databases
	Probes
Probe	IFT88 Related clones (RZPD - Berlin)
	PubMed
PubMed	12 Pubmed reference(s) in LocusLink

Genes in title	automatic search in PubMed
REVIEW articles	automatic search in PubMed
Last year publications	automatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written	09-2002	Dessen P, Le Minor S
Updated	03-2008	Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology

indexed on : Mon Aug 11 20:15:31 2008