Atlas of Genetics and Cytogenetics in Oncology and Haematology

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IFT88 (intraflagellar transport 88 homolog (Chlamydomonas))

Identity

Other namesD13S1056E
DAF19
TG737
TTC10
hTg737
HGNC (Hugo) IFT88
LocusID (NCBI) 8100
Location 13q12.11
Location_base_pair Starts at 21141208 and ends at 21265576 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)IFT88   20606
Entrez_Gene (NCBI)IFT88  8100  intraflagellar transport 88 homolog (Chlamydomonas)
Cards
GeneCards (Weizmann)IFT88
Ensembl (Hinxton)ENSG00000032742 [Gene_View]  chr13:21141208-21265576 [Contig_View]  IFT88 [Vega]
AceView (NCBI)IFT88
Genatlas (Paris)IFT88
SOURCE (Stanford)NM_006531 NM_175605
Genomic and cartography
GoldenPath (UCSC)IFT88  -  13q12.11   chr13:21141208-21265576 +  13q12.11   [Description]    (hg19-Feb_2009)
EnsemblIFT88 - 13q12.11 [CytoView]
Mapping of homologs : NCBIIFT88 [Mapview]
OMIM600595   
Gene and transcription
Genbank (Entrez)AK058172 AK126668 AK300769 AK303853 AK308281
RefSeq transcript (SRS)NM_006531 NM_175605
RefSeq transcript (Entrez)NM_006531 NM_175605
RefSeq genomic (SRS)AC_000145 NC_000013 NC_018924 NT_024524 NW_001838069 NW_004078077
RefSeq genomic (Entrez)AC_000145 NC_000013 NC_018924 NT_024524 NW_001838069 NW_004078077
Consensus coding sequences : CCDS (NCBI)IFT88
Cluster EST : UnigeneHs.187376 [ SRS ] Hs.187376 [ NCBI ]
CGAP (NCI)Hs.187376
Alternative Splicing : Fast-db (Paris)GSHG0007968
Alternative Splicing GalleryENSG00000032742
Gene ExpressionIFT88 [ NCBI-GEO ]   IFT88 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ13099 (SRS) Q13099 (Uniprot)
NextProtQ13099
With graphics : InterProQ13099
Splice isoforms : SwissVarQ13099(Swissvar)
Domaine pattern : Prosite (SRS)TPR (PS50005)    TPR_REGION (PS50293)   
Domaine pattern : Prosite (Expaxy)TPR (PS50005)    TPR_REGION (PS50293)   
Domains : Interpro (SRS)Sel1-like    TPR-1    TPR-contain_dom    TPR-like_helical    TPR_2    TPR_repeat   
Domains : Interpro (EBI)Sel1-like    TPR-1    TPR-contain_dom    TPR-like_helical    TPR_2    TPR_repeat   
Related proteins : CluSTrQ13099
Domain families : Pfam (SRS)TPR_1 (PF00515)    TPR_2 (PF07719)    TPR_6 (PF13174)    TPR_8 (PF13181)   
Domain families : Pfam (Sanger)TPR_1 (PF00515)    TPR_2 (PF07719)    TPR_6 (PF13174)    TPR_8 (PF13181)   
Domain families : Pfam (NCBI)pfam00515    pfam07719    pfam13174    pfam13181   
Domain families : Smart (EMBL)SEL1 (SM00671)  TPR (SM00028)  
DMDM8100
Blocks (Seattle)Q13099
Human Protein AtlasENSG00000032742
HPRD09000
IPIIPI00402297   IPI00646878   IPI00973733   IPI00796368   IPI01018783   IPI00943353   IPI01013692   
Protein Interaction databases
DIP (DOE-UCLA)Q13099
IntAct (EBI)Q13099
FunCoupENSG00000032742
REACTOMEIFT88
Protein Interaction Database8100
BioGRIDIFT88
InParanoidQ13099
Interologous Interaction database Q13099
IntegromeDBIFT88
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)IFT88
SNP (GeneSNP Utah)IFT88
SNP : HGBaseIFT88
Genetic variants : HAPMAPIFT88
Somatic Mutations in Cancer : COSMICIFT88 
CONAN: Copy Number AnalysisIFT88 
Mutations and Diseases : HGMDIFT88
OMIM600595   
GENETests600595   
Disease Genetic AssociationIFT88
Huge Navigator IFT88 [HugePedia]  IFT88 [HugeCancerGEM]
Genomic VariantsIFT88  IFT88 [DGVbeta]
ClinVarIFT88
snp3D : Map Gene to Disease8100
General knowledge
Homologs : HomoloGeneIFT88
Homology/Alignments : Family Browser (UCSC)IFT88
Phylogenetic Trees/Animal Genes : TreeFamIFT88
Chemical/Protein Interactions : CTD8100
Chemical/Pharm GKB GenePA134991804
Clinical trialIFT88
Cancer Resource (Charite)ENSG00000032742
Ontology : AmiGOin utero embryonic development  epithelial cell morphogenesis  centriole  cilium  microtubule basal body  smoothened signaling pathway  determination of left/right symmetry  anterior/posterior pattern specification  dorsal/ventral pattern formation  protein processing  telencephalon development  intraflagellar transport particle B  motile primary cilium  motile cilium  photoreceptor connecting cilium  cilium axoneme  regulation of odontogenesis of dentin-containing tooth  embryonic digit morphogenesis  apical part of cell  positive regulation of proteolysis  embryonic organ development  forebrain morphogenesis  cilium morphogenesis  cardiac septum morphogenesis  lung vasculature development  
Ontology : EGO-EBIin utero embryonic development  epithelial cell morphogenesis  centriole  cilium  microtubule basal body  smoothened signaling pathway  determination of left/right symmetry  anterior/posterior pattern specification  dorsal/ventral pattern formation  protein processing  telencephalon development  intraflagellar transport particle B  motile primary cilium  motile cilium  photoreceptor connecting cilium  cilium axoneme  regulation of odontogenesis of dentin-containing tooth  embryonic digit morphogenesis  apical part of cell  positive regulation of proteolysis  embryonic organ development  forebrain morphogenesis  cilium morphogenesis  cardiac septum morphogenesis  lung vasculature development  
Other databases
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
PubGeneIFT88
iHOPIFT88
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Jun 14 17:54:39 CEST 2013
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