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IFT88 (intraflagellar transport 88)

Identity

Alias (NCBI)D13S1056E
DAF19
TG737
TTC10
hTg737
HGNC (Hugo) IFT88
HGNC Alias symbhTg737
Tg737
D13S1056E
MGC26259
HGNC Alias namepolaris homolog
HGNC Previous nameTTC10
HGNC Previous nametetratricopeptide repeat domain 10
 intraflagellar transport 88 homolog (Chlamydomonas)
LocusID (NCBI) 8100
Atlas_Id 42722
Location 13q12.11  [Link to chromosome band 13q12]
Location_base_pair Starts at 20567157 and ends at 20691444 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
BRF1 (14q32.33) / IFT88 (13q12.11)ELMO1 (7p14.2) / IFT88 (13q12.11)IFT88 (13q12.11) / IFT88 (13q12.11)
IFT88 (13q12.11) / WASF3 (13q12.13)IL17D (13q12.11) / IFT88 (13q12.11)RUNX2 (6p21.1) / IFT88 (13q12.11)
XIRP1 (3p22.2) / IFT88 (13q12.11)ZMYM5 (13q12.11) / IFT88 (13q12.11)IFT88 13q12.11 / WASF3 13q12.13
IL17D 13q12.11 / IFT88 13q12.11RUNX2 6p21.1 / IFT88 13q12.11ZMYM5 13q12.11 / IFT88 13q12.11

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)IFT88   20606
Cards
Entrez_Gene (NCBI)IFT88    intraflagellar transport 88
AliasesD13S1056E; DAF19; TG737; TTC10; 
hTg737
GeneCards (Weizmann)IFT88
Ensembl hg19 (Hinxton)ENSG00000032742 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000032742 [Gene_View]  ENSG00000032742 [Sequence]  chr13:20567157-20691444 [Contig_View]  IFT88 [Vega]
ICGC DataPortalENSG00000032742
TCGA cBioPortalIFT88
AceView (NCBI)IFT88
Genatlas (Paris)IFT88
SOURCE (Princeton)IFT88
Genetics Home Reference (NIH)IFT88
Genomic and cartography
GoldenPath hg38 (UCSC)IFT88  -     chr13:20567157-20691444 +  13q12.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)IFT88  -     13q12.11   [Description]    (hg19-Feb_2009)
GoldenPathIFT88 - 13q12.11 [CytoView hg19]  IFT88 - 13q12.11 [CytoView hg38]
ImmunoBaseENSG00000032742
Genome Data Viewer NCBIIFT88 [Mapview hg19]  
OMIM600595   
Gene and transcription
Genbank (Entrez)AK058172 AK126668 AK300769 AK303853 AK308281
RefSeq transcript (Entrez)NM_001318491 NM_001318493 NM_001353565 NM_001353566 NM_001353567 NM_001353568 NM_001353569 NM_001353570 NM_001353571 NM_001353572 NM_001353573 NM_001353574 NM_001353575 NM_001353576 NM_001353577 NM_001353578 NM_001353579 NM_006531 NM_175605
Consensus coding sequences : CCDS (NCBI)IFT88
Gene ExpressionIFT88 [ NCBI-GEO ]   IFT88 [ EBI - ARRAY_EXPRESS ]   IFT88 [ SEEK ]   IFT88 [ MEM ]
Gene Expression Viewer (FireBrowse)IFT88 [ Firebrowse - Broad ]
GenevisibleExpression of IFT88 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8100
GTEX Portal (Tissue expression)IFT88
Human Protein AtlasENSG00000032742-IFT88 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ13099   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ13099  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ13099
PhosPhoSitePlusQ13099
Domaine pattern : Prosite (Expaxy)TPR (PS50005)    TPR_REGION (PS50293)   
Domains : Interpro (EBI)Sel1-like    TPR-contain_dom    TPR-like_helical_dom_sf    TPR_repeat   
Domain families : Pfam (Sanger)TPR_6 (PF13174)    TPR_8 (PF13181)   
Domain families : Pfam (NCBI)pfam13174    pfam13181   
Domain families : Smart (EMBL)SEL1 (SM00671)  TPR (SM00028)  
Conserved Domain (NCBI)IFT88
SuperfamilyQ13099
AlphaFold pdb e-kbQ13099   
Human Protein Atlas [tissue]ENSG00000032742-IFT88 [tissue]
HPRD09000
Protein Interaction databases
DIP (DOE-UCLA)Q13099
IntAct (EBI)Q13099
BioGRIDIFT88
STRING (EMBL)IFT88
ZODIACIFT88
Ontologies - Pathways
QuickGOQ13099
Ontology : AmiGOkidney development  protein binding  centrosome  centriole  centriole  centriole  cytosol  cilium  cilium  cilium  kinesin binding  intraciliary transport particle B  motile cilium  intraciliary transport involved in cilium assembly  aggrephagy  ciliary basal body  ciliary basal body  ciliary basal body  sperm flagellum  intraciliary transport  inner ear receptor cell stereocilium organization  cilium assembly  ciliary tip  ciliary base  non-motile cilium  regulation of cilium assembly  non-motile cilium assembly  regulation of autophagosome assembly  
Ontology : EGO-EBIkidney development  protein binding  centrosome  centriole  centriole  centriole  cytosol  cilium  cilium  cilium  kinesin binding  intraciliary transport particle B  motile cilium  intraciliary transport involved in cilium assembly  aggrephagy  ciliary basal body  ciliary basal body  ciliary basal body  sperm flagellum  intraciliary transport  inner ear receptor cell stereocilium organization  cilium assembly  ciliary tip  ciliary base  non-motile cilium  regulation of cilium assembly  non-motile cilium assembly  regulation of autophagosome assembly  
NDEx NetworkIFT88
Atlas of Cancer Signalling NetworkIFT88
Wikipedia pathwaysIFT88
Orthology - Evolution
OrthoDB8100
GeneTree (enSembl)ENSG00000032742
Phylogenetic Trees/Animal Genes : TreeFamIFT88
Homologs : HomoloGeneIFT88
Homology/Alignments : Family Browser (UCSC)IFT88
Gene fusions - Rearrangements
Fusion : MitelmanIFT88/WASF3 [13q12.11/13q12.13]  
Fusion : MitelmanIL17D/IFT88 [13q12.11/13q12.11]  
Fusion : MitelmanRUNX2/IFT88 [6p21.1/13q12.11]  
Fusion : MitelmanZMYM5/IFT88 [13q12.11/13q12.11]  
Fusion : QuiverIFT88
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIFT88 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IFT88
dbVarIFT88
ClinVarIFT88
MonarchIFT88
1000_GenomesIFT88 
Exome Variant ServerIFT88
GNOMAD BrowserENSG00000032742
Varsome BrowserIFT88
ACMGIFT88 variants
VarityQ13099
Genomic Variants (DGV)IFT88 [DGVbeta]
DECIPHERIFT88 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisIFT88 
Mutations
ICGC Data PortalIFT88 
TCGA Data PortalIFT88 
Broad Tumor PortalIFT88
OASIS PortalIFT88 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICIFT88  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DIFT88
Mutations and Diseases : HGMDIFT88
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaIFT88
DgiDB (Drug Gene Interaction Database)IFT88
DoCM (Curated mutations)IFT88
CIViC (Clinical Interpretations of Variants in Cancer)IFT88
Cancer3DIFT88
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM600595   
Orphanet
DisGeNETIFT88
MedgenIFT88
Genetic Testing Registry IFT88
NextProtQ13099 [Medical]
GENETestsIFT88
Target ValidationIFT88
Huge Navigator IFT88 [HugePedia]
ClinGenIFT88
Clinical trials, drugs, therapy
MyCancerGenomeIFT88
Protein Interactions : CTDIFT88
Pharm GKB GenePA134991804
PharosQ13099
Clinical trialIFT88
Miscellaneous
canSAR (ICR)IFT88
HarmonizomeIFT88
DataMed IndexIFT88
Probes
Litterature
PubMed55 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXIFT88
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:13:31 CEST 2021

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