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IGBP1 (immunoglobulin (CD79A) binding protein 1)

Identity

Alias_namesIBP1
Other aliasALPHA-4
HGNC (Hugo) IGBP1
LocusID (NCBI) 3476
Atlas_Id 51526
Location Xq13.1  [Link to chromosome band Xq13]
Location_base_pair Starts at 69353318 and ends at 69386173 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
HLA-A (6p22.1) / IGBP1 (Xq13.1)IGBP1 (Xq13.1) / GLS (2q32.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)IGBP1   5461
Cards
Entrez_Gene (NCBI)IGBP1  3476  immunoglobulin (CD79A) binding protein 1
AliasesALPHA-4; IBP1
GeneCards (Weizmann)IGBP1
Ensembl hg19 (Hinxton)ENSG00000089289 [Gene_View]  chrX:69353318-69386173 [Contig_View]  IGBP1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000089289 [Gene_View]  chrX:69353318-69386173 [Contig_View]  IGBP1 [Vega]
ICGC DataPortalENSG00000089289
TCGA cBioPortalIGBP1
AceView (NCBI)IGBP1
Genatlas (Paris)IGBP1
WikiGenes3476
SOURCE (Princeton)IGBP1
Genetics Home Reference (NIH)IGBP1
Genomic and cartography
GoldenPath hg19 (UCSC)IGBP1  -     chrX:69353318-69386173 +  Xq13.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)IGBP1  -     Xq13.1   [Description]    (hg38-Dec_2013)
EnsemblIGBP1 - Xq13.1 [CytoView hg19]  IGBP1 - Xq13.1 [CytoView hg38]
Mapping of homologs : NCBIIGBP1 [Mapview hg19]  IGBP1 [Mapview hg38]
OMIM300139   300472   
Gene and transcription
Genbank (Entrez)AK054596 AK315660 BC004137 BT006736 CR456782
RefSeq transcript (Entrez)NM_001551
RefSeq genomic (Entrez)NC_000023 NC_018934 NG_012084 NT_011651 NW_004929443
Consensus coding sequences : CCDS (NCBI)IGBP1
Cluster EST : UnigeneHs.496267 [ NCBI ]
CGAP (NCI)Hs.496267
Alternative Splicing GalleryENSG00000089289
Gene ExpressionIGBP1 [ NCBI-GEO ]   IGBP1 [ EBI - ARRAY_EXPRESS ]   IGBP1 [ SEEK ]   IGBP1 [ MEM ]
Gene Expression Viewer (FireBrowse)IGBP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3476
GTEX Portal (Tissue expression)IGBP1
Protein : pattern, domain, 3D structure
UniProt/SwissProtP78318   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP78318  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP78318
Splice isoforms : SwissVarP78318
PhosPhoSitePlusP78318
Domains : Interpro (EBI)TAP42-like   
Domain families : Pfam (Sanger)TAP42 (PF04177)   
Domain families : Pfam (NCBI)pfam04177   
Conserved Domain (NCBI)IGBP1
DMDM Disease mutations3476
Blocks (Seattle)IGBP1
PDB (SRS)4IYP   
PDB (PDBSum)4IYP   
PDB (IMB)4IYP   
PDB (RSDB)4IYP   
Structural Biology KnowledgeBase4IYP   
SCOP (Structural Classification of Proteins)4IYP   
CATH (Classification of proteins structures)4IYP   
SuperfamilyP78318
Human Protein AtlasENSG00000089289
Peptide AtlasP78318
HPRD02140
IPIIPI00019148   
Protein Interaction databases
DIP (DOE-UCLA)P78318
IntAct (EBI)P78318
FunCoupENSG00000089289
BioGRIDIGBP1
STRING (EMBL)IGBP1
ZODIACIGBP1
Ontologies - Pathways
QuickGOP78318
Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  protein binding  cytoplasm  cytosol  microtubule  signal transduction  protein phosphatase type 2A regulator activity  protein domain specific binding  mitogen-activated protein kinase kinase binding  protein complex binding  negative regulation of stress-activated MAPK cascade  regulation of protein phosphatase type 2A activity  response to tumor necrosis factor  positive regulation of dephosphorylation  negative regulation of protein dephosphorylation  B cell activation  negative regulation of cysteine-type endopeptidase activity involved in apoptotic process  positive regulation of transcription from RNA polymerase II promoter  protein phosphatase 2A binding  regulation of microtubule-based movement  response to interleukin-1  negative regulation of apoptotic signaling pathway  
Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  protein binding  cytoplasm  cytosol  microtubule  signal transduction  protein phosphatase type 2A regulator activity  protein domain specific binding  mitogen-activated protein kinase kinase binding  protein complex binding  negative regulation of stress-activated MAPK cascade  regulation of protein phosphatase type 2A activity  response to tumor necrosis factor  positive regulation of dephosphorylation  negative regulation of protein dephosphorylation  B cell activation  negative regulation of cysteine-type endopeptidase activity involved in apoptotic process  positive regulation of transcription from RNA polymerase II promoter  protein phosphatase 2A binding  regulation of microtubule-based movement  response to interleukin-1  negative regulation of apoptotic signaling pathway  
NDEx NetworkIGBP1
Atlas of Cancer Signalling NetworkIGBP1
Wikipedia pathwaysIGBP1
Orthology - Evolution
OrthoDB3476
GeneTree (enSembl)ENSG00000089289
Phylogenetic Trees/Animal Genes : TreeFamIGBP1
HOVERGENP78318
HOGENOMP78318
Homologs : HomoloGeneIGBP1
Homology/Alignments : Family Browser (UCSC)IGBP1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIGBP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IGBP1
dbVarIGBP1
ClinVarIGBP1
1000_GenomesIGBP1 
Exome Variant ServerIGBP1
ExAC (Exome Aggregation Consortium)IGBP1 (select the gene name)
Genetic variants : HAPMAP3476
Genomic Variants (DGV)IGBP1 [DGVbeta]
DECIPHER (Syndromes)X:69353318-69386173  ENSG00000089289
CONAN: Copy Number AnalysisIGBP1 
Mutations
ICGC Data PortalIGBP1 
TCGA Data PortalIGBP1 
Broad Tumor PortalIGBP1
OASIS PortalIGBP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICIGBP1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDIGBP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch IGBP1
DgiDB (Drug Gene Interaction Database)IGBP1
DoCM (Curated mutations)IGBP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IGBP1 (select a term)
intoGenIGBP1
Cancer3DIGBP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300139    300472   
Orphanet10688   
MedgenIGBP1
Genetic Testing Registry IGBP1
NextProtP78318 [Medical]
TSGene3476
GENETestsIGBP1
Huge Navigator IGBP1 [HugePedia]
snp3D : Map Gene to Disease3476
BioCentury BCIQIGBP1
ClinGenIGBP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD3476
Chemical/Pharm GKB GenePA29694
Clinical trialIGBP1
Miscellaneous
canSAR (ICR)IGBP1 (select the gene name)
Probes
Litterature
PubMed53 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineIGBP1
EVEXIGBP1
GoPubMedIGBP1
iHOPIGBP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:04:50 CEST 2017

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