Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

IGDCC4 (immunoglobulin superfamily DCC subclass member 4)

Identity

Alias_namesimmunoglobulin superfamily
Alias_symbol (synonym)NOPE
LOC57722
Other aliasDDM36
HGNC (Hugo) IGDCC4
LocusID (NCBI) 57722
Atlas_Id 52266
Location 15q22.31  [Link to chromosome band 15q22]
Location_base_pair Starts at 65381487 and ends at 65423072 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CLPX (15q22.31) / IGDCC4 (15q22.31)IGDCC4 (15q22.31) / ARHGEF40 (14q11.2)PHACTR3 (20q13.32) / IGDCC4 (15q22.31)
CLPX 15q22.31 / IGDCC4 15q22.31

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)IGDCC4   13770
Cards
Entrez_Gene (NCBI)IGDCC4  57722  immunoglobulin superfamily DCC subclass member 4
AliasesDDM36; NOPE
GeneCards (Weizmann)IGDCC4
Ensembl hg19 (Hinxton)ENSG00000103742 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000103742 [Gene_View]  chr15:65381487-65423072 [Contig_View]  IGDCC4 [Vega]
ICGC DataPortalENSG00000103742
TCGA cBioPortalIGDCC4
AceView (NCBI)IGDCC4
Genatlas (Paris)IGDCC4
WikiGenes57722
SOURCE (Princeton)IGDCC4
Genetics Home Reference (NIH)IGDCC4
Genomic and cartography
GoldenPath hg38 (UCSC)IGDCC4  -     chr15:65381487-65423072 -  15q22.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)IGDCC4  -     15q22.31   [Description]    (hg19-Feb_2009)
EnsemblIGDCC4 - 15q22.31 [CytoView hg19]  IGDCC4 - 15q22.31 [CytoView hg38]
Mapping of homologs : NCBIIGDCC4 [Mapview hg19]  IGDCC4 [Mapview hg38]
OMIM616810   
Gene and transcription
Genbank (Entrez)AB046848 AB052622 AK124045 BC040648 BC152805
RefSeq transcript (Entrez)NM_020962
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)IGDCC4
Cluster EST : UnigeneHs.458607 [ NCBI ]
CGAP (NCI)Hs.458607
Alternative Splicing GalleryENSG00000103742
Gene ExpressionIGDCC4 [ NCBI-GEO ]   IGDCC4 [ EBI - ARRAY_EXPRESS ]   IGDCC4 [ SEEK ]   IGDCC4 [ MEM ]
Gene Expression Viewer (FireBrowse)IGDCC4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57722
GTEX Portal (Tissue expression)IGDCC4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TDY8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TDY8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TDY8
Splice isoforms : SwissVarQ8TDY8
PhosPhoSitePlusQ8TDY8
Domaine pattern : Prosite (Expaxy)FN3 (PS50853)    IG_LIKE (PS50835)   
Domains : Interpro (EBI)FN3_dom    Ig-like_dom    Ig-like_fold    Ig_I-set    Ig_sub    Ig_sub2   
Domain families : Pfam (Sanger)fn3 (PF00041)    I-set (PF07679)   
Domain families : Pfam (NCBI)pfam00041    pfam07679   
Domain families : Smart (EMBL)FN3 (SM00060)  IG (SM00409)  IGc2 (SM00408)  
Conserved Domain (NCBI)IGDCC4
DMDM Disease mutations57722
Blocks (Seattle)IGDCC4
SuperfamilyQ8TDY8
Human Protein AtlasENSG00000103742
Peptide AtlasQ8TDY8
HPRD11399
IPIIPI00154834   IPI00151989   IPI00953039   
Protein Interaction databases
DIP (DOE-UCLA)Q8TDY8
IntAct (EBI)Q8TDY8
FunCoupENSG00000103742
BioGRIDIGDCC4
STRING (EMBL)IGDCC4
ZODIACIGDCC4
Ontologies - Pathways
QuickGOQ8TDY8
Ontology : AmiGOplasma membrane  integral component of membrane  
Ontology : EGO-EBIplasma membrane  integral component of membrane  
NDEx NetworkIGDCC4
Atlas of Cancer Signalling NetworkIGDCC4
Wikipedia pathwaysIGDCC4
Orthology - Evolution
OrthoDB57722
GeneTree (enSembl)ENSG00000103742
Phylogenetic Trees/Animal Genes : TreeFamIGDCC4
HOVERGENQ8TDY8
HOGENOMQ8TDY8
Homologs : HomoloGeneIGDCC4
Homology/Alignments : Family Browser (UCSC)IGDCC4
Gene fusions - Rearrangements
Fusion : MitelmanCLPX/IGDCC4 [15q22.31/15q22.31]  [t(15;15)(q22;q22)]  
Fusion: TCGACLPX 15q22.31 IGDCC4 15q22.31 PRAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIGDCC4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IGDCC4
dbVarIGDCC4
ClinVarIGDCC4
1000_GenomesIGDCC4 
Exome Variant ServerIGDCC4
ExAC (Exome Aggregation Consortium)IGDCC4 (select the gene name)
Genetic variants : HAPMAP57722
Genomic Variants (DGV)IGDCC4 [DGVbeta]
DECIPHERIGDCC4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisIGDCC4 
Mutations
ICGC Data PortalIGDCC4 
TCGA Data PortalIGDCC4 
Broad Tumor PortalIGDCC4
OASIS PortalIGDCC4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICIGDCC4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDIGDCC4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch IGDCC4
DgiDB (Drug Gene Interaction Database)IGDCC4
DoCM (Curated mutations)IGDCC4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IGDCC4 (select a term)
intoGenIGDCC4
Cancer3DIGDCC4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616810   
Orphanet
MedgenIGDCC4
Genetic Testing Registry IGDCC4
NextProtQ8TDY8 [Medical]
TSGene57722
GENETestsIGDCC4
Huge Navigator IGDCC4 [HugePedia]
snp3D : Map Gene to Disease57722
BioCentury BCIQIGDCC4
ClinGenIGDCC4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57722
Chemical/Pharm GKB GenePA164720914
Clinical trialIGDCC4
Miscellaneous
canSAR (ICR)IGDCC4 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineIGDCC4
EVEXIGDCC4
GoPubMedIGDCC4
iHOPIGDCC4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 12:20:04 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.