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IGF2BP2-AS1 (IGF2BP2 antisense RNA 1)

Identity

Alias_namesC3orf65
chromosome 3 open reading frame 65
Alias_symbol (synonym)FLJ32900
Other alias
HGNC (Hugo) IGF2BP2-AS1
LocusID (NCBI) 646600
Atlas_Id 64543
Location 3q27.2  [Link to chromosome band 3q27]
Location_base_pair Starts at 185713252 and ends at 185729787 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)IGF2BP2-AS1   32674
Cards
Entrez_Gene (NCBI)IGF2BP2-AS1  646600  IGF2BP2 antisense RNA 1
AliasesC3orf65
GeneCards (Weizmann)IGF2BP2-AS1
Ensembl hg19 (Hinxton)ENSG00000163915 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000163915 [Gene_View]  chr3:185713252-185729787 [Contig_View]  IGF2BP2-AS1 [Vega]
ICGC DataPortalENSG00000163915
TCGA cBioPortalIGF2BP2-AS1
AceView (NCBI)IGF2BP2-AS1
Genatlas (Paris)IGF2BP2-AS1
WikiGenes646600
SOURCE (Princeton)IGF2BP2-AS1
Genetics Home Reference (NIH)IGF2BP2-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)IGF2BP2-AS1  -     chr3:185713252-185729787 +  3q27.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)IGF2BP2-AS1  -     3q27.2   [Description]    (hg19-Feb_2009)
EnsemblIGF2BP2-AS1 - 3q27.2 [CytoView hg19]  IGF2BP2-AS1 - 3q27.2 [CytoView hg38]
Mapping of homologs : NCBIIGF2BP2-AS1 [Mapview hg19]  IGF2BP2-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK057462 BC039525 BC041450 BC137313 BC137314
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)IGF2BP2-AS1
Cluster EST : UnigeneHs.737101 [ NCBI ]
CGAP (NCI)Hs.737101
Alternative Splicing GalleryENSG00000163915
Gene ExpressionIGF2BP2-AS1 [ NCBI-GEO ]   IGF2BP2-AS1 [ EBI - ARRAY_EXPRESS ]   IGF2BP2-AS1 [ SEEK ]   IGF2BP2-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)IGF2BP2-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)646600
GTEX Portal (Tissue expression)IGF2BP2-AS1
Human Protein AtlasENSG00000163915-IGF2BP2-AS1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96M15   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96M15  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96M15
Splice isoforms : SwissVarQ96M15
PhosPhoSitePlusQ96M15
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)IGF2BP2-AS1
DMDM Disease mutations646600
Blocks (Seattle)IGF2BP2-AS1
SuperfamilyQ96M15
Human Protein Atlas [tissue]ENSG00000163915-IGF2BP2-AS1 [tissue]
Peptide AtlasQ96M15
IPIIPI00065187   IPI00793144   
Protein Interaction databases
DIP (DOE-UCLA)Q96M15
IntAct (EBI)Q96M15
FunCoupENSG00000163915
BioGRIDIGF2BP2-AS1
STRING (EMBL)IGF2BP2-AS1
ZODIACIGF2BP2-AS1
Ontologies - Pathways
QuickGOQ96M15
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkIGF2BP2-AS1
Atlas of Cancer Signalling NetworkIGF2BP2-AS1
Wikipedia pathwaysIGF2BP2-AS1
Orthology - Evolution
OrthoDB646600
GeneTree (enSembl)ENSG00000163915
Phylogenetic Trees/Animal Genes : TreeFamIGF2BP2-AS1
HOVERGENQ96M15
HOGENOMQ96M15
Homologs : HomoloGeneIGF2BP2-AS1
Homology/Alignments : Family Browser (UCSC)IGF2BP2-AS1
Gene fusions - Rearrangements
Fusion: Tumor Portal IGF2BP2-AS1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIGF2BP2-AS1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IGF2BP2-AS1
dbVarIGF2BP2-AS1
ClinVarIGF2BP2-AS1
1000_GenomesIGF2BP2-AS1 
Exome Variant ServerIGF2BP2-AS1
ExAC (Exome Aggregation Consortium)ENSG00000163915
GNOMAD BrowserENSG00000163915
Genetic variants : HAPMAP646600
Genomic Variants (DGV)IGF2BP2-AS1 [DGVbeta]
DECIPHERIGF2BP2-AS1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisIGF2BP2-AS1 
Mutations
ICGC Data PortalIGF2BP2-AS1 
TCGA Data PortalIGF2BP2-AS1 
Broad Tumor PortalIGF2BP2-AS1
OASIS PortalIGF2BP2-AS1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDIGF2BP2-AS1
BioMutasearch IGF2BP2-AS1
DgiDB (Drug Gene Interaction Database)IGF2BP2-AS1
DoCM (Curated mutations)IGF2BP2-AS1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IGF2BP2-AS1 (select a term)
intoGenIGF2BP2-AS1
Cancer3DIGF2BP2-AS1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenIGF2BP2-AS1
Genetic Testing Registry IGF2BP2-AS1
NextProtQ96M15 [Medical]
TSGene646600
GENETestsIGF2BP2-AS1
Target ValidationIGF2BP2-AS1
Huge Navigator IGF2BP2-AS1 [HugePedia]
snp3D : Map Gene to Disease646600
BioCentury BCIQIGF2BP2-AS1
ClinGenIGF2BP2-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD646600
Chemical/Pharm GKB GenePA144596507
Clinical trialIGF2BP2-AS1
<ONT cOLNR=#00004F>Miscellaneous
canSAR (ICR)IGF2BP2-AS1 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineIGF2BP2-AS1
EVEXIGF2BP2-AS1
GoPubMedIGF2BP2-AS1
iHOPIGF2BP2-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 11:51:18 CET 2017

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