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IGFBPL1 (insulin like growth factor binding protein like 1)

Identity

Alias_namesinsulin-like growth factor binding protein-like 1
insulin like growth factor binding protein-like 1
Alias_symbol (synonym)bA113O24.1
Other aliasIGFBP-RP4
IGFBPRP4
HGNC (Hugo) IGFBPL1
LocusID (NCBI) 347252
Atlas_Id 45687
Location 9p13.1  [Link to chromosome band 9p13]
Location_base_pair Starts at 38406528 and ends at 38424447 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)IGFBPL1   20081
Cards
Entrez_Gene (NCBI)IGFBPL1  347252  insulin like growth factor binding protein like 1
AliasesIGFBP-RP4; IGFBPRP4; bA113O24.1
GeneCards (Weizmann)IGFBPL1
Ensembl hg19 (Hinxton)ENSG00000137142 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000137142 [Gene_View]  chr9:38406528-38424447 [Contig_View]  IGFBPL1 [Vega]
ICGC DataPortalENSG00000137142
TCGA cBioPortalIGFBPL1
AceView (NCBI)IGFBPL1
Genatlas (Paris)IGFBPL1
WikiGenes347252
SOURCE (Princeton)IGFBPL1
Genetics Home Reference (NIH)IGFBPL1
Genomic and cartography
GoldenPath hg38 (UCSC)IGFBPL1  -     chr9:38406528-38424447 -  9p13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)IGFBPL1  -     9p13.1   [Description]    (hg19-Feb_2009)
EnsemblIGFBPL1 - 9p13.1 [CytoView hg19]  IGFBPL1 - 9p13.1 [CytoView hg38]
Mapping of homologs : NCBIIGFBPL1 [Mapview hg19]  IGFBPL1 [Mapview hg38]
OMIM610413   
Gene and transcription
Genbank (Entrez)AK055716 AK131521 BC146371
RefSeq transcript (Entrez)NM_001007563
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)IGFBPL1
Cluster EST : UnigeneHs.349705 [ NCBI ]
CGAP (NCI)Hs.349705
Alternative Splicing GalleryENSG00000137142
Gene ExpressionIGFBPL1 [ NCBI-GEO ]   IGFBPL1 [ EBI - ARRAY_EXPRESS ]   IGFBPL1 [ SEEK ]   IGFBPL1 [ MEM ]
Gene Expression Viewer (FireBrowse)IGFBPL1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)347252
GTEX Portal (Tissue expression)IGFBPL1
Human Protein AtlasENSG00000137142-IGFBPL1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WX77   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WX77  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WX77
Splice isoforms : SwissVarQ8WX77
PhosPhoSitePlusQ8WX77
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)    IGFBP_N_2 (PS51323)    KAZAL_2 (PS51465)   
Domains : Interpro (EBI)Growth_fac_rcpt_    Ig-like_dom    Ig-like_fold    Ig_I-set    Ig_sub    Ig_sub2    IGFBP-like    IGFBP_rP_mac25    Kazal_dom   
Domain families : Pfam (Sanger)I-set (PF07679)    IGFBP (PF00219)    Kazal_1 (PF00050)   
Domain families : Pfam (NCBI)pfam07679    pfam00219    pfam00050   
Domain families : Smart (EMBL)IB (SM00121)  IG (SM00409)  IGc2 (SM00408)  KAZAL (SM00280)  
Conserved Domain (NCBI)IGFBPL1
DMDM Disease mutations347252
Blocks (Seattle)IGFBPL1
SuperfamilyQ8WX77
Human Protein Atlas [tissue]ENSG00000137142-IGFBPL1 [tissue]
Peptide AtlasQ8WX77
HPRD17138
IPIIPI00291987   
Protein Interaction databases
DIP (DOE-UCLA)Q8WX77
IntAct (EBI)Q8WX77
FunCoupENSG00000137142
BioGRIDIGFBPL1
STRING (EMBL)IGFBPL1
ZODIACIGFBPL1
Ontologies - Pathways
QuickGOQ8WX77
Ontology : AmiGOregulation of cell growth  insulin-like growth factor binding  extracellular region  
Ontology : EGO-EBIregulation of cell growth  insulin-like growth factor binding  extracellular region  
NDEx NetworkIGFBPL1
Atlas of Cancer Signalling NetworkIGFBPL1
Wikipedia pathwaysIGFBPL1
Orthology - Evolution
OrthoDB347252
GeneTree (enSembl)ENSG00000137142
Phylogenetic Trees/Animal Genes : TreeFamIGFBPL1
HOVERGENQ8WX77
HOGENOMQ8WX77
Homologs : HomoloGeneIGFBPL1
Homology/Alignments : Family Browser (UCSC)IGFBPL1
Gene fusions - Rearrangements
Tumor Fusion PortalIGFBPL1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIGFBPL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IGFBPL1
dbVarIGFBPL1
ClinVarIGFBPL1
1000_GenomesIGFBPL1 
Exome Variant ServerIGFBPL1
ExAC (Exome Aggregation Consortium)ENSG00000137142
GNOMAD BrowserENSG00000137142
Genetic variants : HAPMAP347252
Genomic Variants (DGV)IGFBPL1 [DGVbeta]
DECIPHERIGFBPL1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisIGFBPL1 
Mutations
ICGC Data PortalIGFBPL1 
TCGA Data PortalIGFBPL1 
Broad Tumor PortalIGFBPL1
OASIS PortalIGFBPL1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICIGFBPL1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDIGFBPL1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch IGFBPL1
DgiDB (Drug Gene Interaction Database)IGFBPL1
DoCM (Curated mutations)IGFBPL1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IGFBPL1 (select a term)
intoGenIGFBPL1
Cancer3DIGFBPL1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610413   
Orphanet
DisGeNETIGFBPL1
MedgenIGFBPL1
Genetic Testing Registry IGFBPL1
NextProtQ8WX77 [Medical]
TSGene347252
GENETestsIGFBPL1
Target ValidationIGFBPL1
Huge Navigator IGFBPL1 [HugePedia]
snp3D : Map Gene to Disease347252
BioCentury BCIQIGFBPL1
ClinGenIGFBPL1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD347252
Chemical/Pharm GKB GenePA134937275
Clinical trialIGFBPL1
Miscellaneous
canSAR (ICR)IGFBPL1 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineIGFBPL1
EVEXIGFBPL1
GoPubMedIGFBPL1
iHOPIGFBPL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:17:27 CET 2017

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