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IGFL4 (IGF like family member 4)

Identity

Other alias-
HGNC (Hugo) IGFL4
LocusID (NCBI) 444882
Atlas_Id 64547
Location 19q13.32  [Link to chromosome band 19q13]
Location_base_pair Starts at 46039748 and ends at 46041016 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)IGFL4   32931
Cards
Entrez_Gene (NCBI)IGFL4  444882  IGF like family member 4
Aliases
GeneCards (Weizmann)IGFL4
Ensembl hg19 (Hinxton)ENSG00000204869 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204869 [Gene_View]  chr19:46039748-46041016 [Contig_View]  IGFL4 [Vega]
ICGC DataPortalENSG00000204869
TCGA cBioPortalIGFL4
AceView (NCBI)IGFL4
Genatlas (Paris)IGFL4
WikiGenes444882
SOURCE (Princeton)IGFL4
Genetics Home Reference (NIH)IGFL4
Genomic and cartography
GoldenPath hg38 (UCSC)IGFL4  -     chr19:46039748-46041016 -  19q13.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)IGFL4  -     19q13.32   [Description]    (hg19-Feb_2009)
EnsemblIGFL4 - 19q13.32 [CytoView hg19]  IGFL4 - 19q13.32 [CytoView hg38]
Mapping of homologs : NCBIIGFL4 [Mapview hg19]  IGFL4 [Mapview hg38]
OMIM610547   
Gene and transcription
Genbank (Entrez)AY672114
RefSeq transcript (Entrez)NM_001002923
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)IGFL4
Cluster EST : UnigeneHs.531310 [ NCBI ]
CGAP (NCI)Hs.531310
Alternative Splicing GalleryENSG00000204869
Gene ExpressionIGFL4 [ NCBI-GEO ]   IGFL4 [ EBI - ARRAY_EXPRESS ]   IGFL4 [ SEEK ]   IGFL4 [ MEM ]
Gene Expression Viewer (FireBrowse)IGFL4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)444882
GTEX Portal (Tissue expression)IGFL4
Human Protein AtlasENSG00000204869-IGFL4 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6B9Z1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6B9Z1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6B9Z1
Splice isoforms : SwissVarQ6B9Z1
PhosPhoSitePlusQ6B9Z1
Domains : Interpro (EBI)IGFL   
Domain families : Pfam (Sanger)IGFL (PF14653)   
Domain families : Pfam (NCBI)pfam14653   
Conserved Domain (NCBI)IGFL4
DMDM Disease mutations444882
Blocks (Seattle)IGFL4
SuperfamilyQ6B9Z1
Human Protein Atlas [tissue]ENSG00000204869-IGFL4 [tissue]
Peptide AtlasQ6B9Z1
HPRD13730
IPIIPI00457301   
Protein Interaction databases
DIP (DOE-UCLA)Q6B9Z1
IntAct (EBI)Q6B9Z1
FunCoupENSG00000204869
BioGRIDIGFL4
STRING (EMBL)IGFL4
ZODIACIGFL4
Ontologies - Pathways
QuickGOQ6B9Z1
Ontology : AmiGOextracellular space  
Ontology : EGO-EBIextracellular space  
NDEx NetworkIGFL4
Atlas of Cancer Signalling NetworkIGFL4
Wikipedia pathwaysIGFL4
Orthology - Evolution
OrthoDB444882
GeneTree (enSembl)ENSG00000204869
Phylogenetic Trees/Animal Genes : TreeFamIGFL4
HOVERGENQ6B9Z1
HOGENOMQ6B9Z1
Homologs : HomoloGeneIGFL4
Homology/Alignments : Family Browser (UCSC)IGFL4
Gene fusions - Rearrangements
Tumor Fusion PortalIGFL4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIGFL4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IGFL4
dbVarIGFL4
ClinVarIGFL4
1000_GenomesIGFL4 
Exome Variant ServerIGFL4
ExAC (Exome Aggregation Consortium)ENSG00000204869
GNOMAD BrowserENSG00000204869
Genetic variants : HAPMAP444882
Genomic Variants (DGV)IGFL4 [DGVbeta]
DECIPHERIGFL4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisIGFL4 
Mutations
ICGC Data PortalIGFL4 
TCGA Data PortalIGFL4 
Broad Tumor PortalIGFL4
OASIS PortalIGFL4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICIGFL4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDIGFL4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch IGFL4
DgiDB (Drug Gene Interaction Database)IGFL4
DoCM (Curated mutations)IGFL4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IGFL4 (select a term)
intoGenIGFL4
Cancer3DIGFL4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610547   
Orphanet
DisGeNETIGFL4
MedgenIGFL4
Genetic Testing Registry IGFL4
NextProtQ6B9Z1 [Medical]
TSGene444882
GENETestsIGFL4
Target ValidationIGFL4
Huge Navigator IGFL4 [HugePedia]
snp3D : Map Gene to Disease444882
BioCentury BCIQIGFL4
ClinGenIGFL4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD444882
Chemical/Pharm GKB GenePA147357961
Clinical trialIGFL4
Miscellaneous
canSAR (ICR)IGFL4 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineIGFL4
EVEXIGFL4
GoPubMedIGFL4
iHOPIGFL4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:38:42 CET 2017

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