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IGFLR1 (IGF like family receptor 1)

Identity

Alias_namesU2AF1L4
TMEM149
U2(RNU2) small nuclear RNA auxiliary factor 1-like 4
transmembrane protein 149
Alias_symbol (synonym)FLJ22573
Other alias
HGNC (Hugo) IGFLR1
LocusID (NCBI) 79713
Atlas_Id 52335
Location 19q13.12  [Link to chromosome band 19q13]
Location_base_pair Starts at 36230151 and ends at 36233351 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
IGFLR1 (19q13.12) / CABLES1 (18q11.2)IGFLR1 (19q13.12) / GTF3C5 (9q34.2)PROSER3 (19q13.12) / IGFLR1 (19q13.12)
C19orf55 IGFLR1 19q13.12

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)IGFLR1   23620
Cards
Entrez_Gene (NCBI)IGFLR1  79713  IGF like family receptor 1
AliasesTMEM149; U2AF1L4
GeneCards (Weizmann)IGFLR1
Ensembl hg19 (Hinxton)ENSG00000126246 [Gene_View]  chr19:36230151-36233351 [Contig_View]  IGFLR1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000126246 [Gene_View]  chr19:36230151-36233351 [Contig_View]  IGFLR1 [Vega]
ICGC DataPortalENSG00000126246
TCGA cBioPortalIGFLR1
AceView (NCBI)IGFLR1
Genatlas (Paris)IGFLR1
WikiGenes79713
SOURCE (Princeton)IGFLR1
Genetics Home Reference (NIH)IGFLR1
Genomic and cartography
GoldenPath hg19 (UCSC)IGFLR1  -     chr19:36230151-36233351 -  19q13.12   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)IGFLR1  -     19q13.12   [Description]    (hg38-Dec_2013)
EnsemblIGFLR1 - 19q13.12 [CytoView hg19]  IGFLR1 - 19q13.12 [CytoView hg38]
Mapping of homologs : NCBIIGFLR1 [Mapview hg19]  IGFLR1 [Mapview hg38]
OMIM614143   
Gene and transcription
Genbank (Entrez)AK026226 AX775837 BC031329 BC126481 BC126483
RefSeq transcript (Entrez)NM_024660
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_011109 NW_004929415
Consensus coding sequences : CCDS (NCBI)IGFLR1
Cluster EST : UnigeneHs.352548 [ NCBI ]
CGAP (NCI)Hs.352548
Alternative Splicing GalleryENSG00000126246
Gene ExpressionIGFLR1 [ NCBI-GEO ]   IGFLR1 [ EBI - ARRAY_EXPRESS ]   IGFLR1 [ SEEK ]   IGFLR1 [ MEM ]
Gene Expression Viewer (FireBrowse)IGFLR1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79713
GTEX Portal (Tissue expression)IGFLR1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H665   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H665  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H665
Splice isoforms : SwissVarQ9H665
PhosPhoSitePlusQ9H665
Domains : Interpro (EBI)DEATH-like_dom   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)IGFLR1
DMDM Disease mutations79713
Blocks (Seattle)IGFLR1
SuperfamilyQ9H665
Human Protein AtlasENSG00000126246
Peptide AtlasQ9H665
HPRD07996
IPIIPI00002910   IPI00166947   
Protein Interaction databases
DIP (DOE-UCLA)Q9H665
IntAct (EBI)Q9H665
FunCoupENSG00000126246
BioGRIDIGFLR1
STRING (EMBL)IGFLR1
ZODIACIGFLR1
Ontologies - Pathways
QuickGOQ9H665
Ontology : AmiGOprotein binding  plasma membrane  integral component of membrane  
Ontology : EGO-EBIprotein binding  plasma membrane  integral component of membrane  
NDEx NetworkIGFLR1
Atlas of Cancer Signalling NetworkIGFLR1
Wikipedia pathwaysIGFLR1
Orthology - Evolution
OrthoDB79713
GeneTree (enSembl)ENSG00000126246
Phylogenetic Trees/Animal Genes : TreeFamIGFLR1
HOVERGENQ9H665
HOGENOMQ9H665
Homologs : HomoloGeneIGFLR1
Homology/Alignments : Family Browser (UCSC)IGFLR1
Gene fusions - Rearrangements
Fusion : MitelmanPROSER3/IGFLR1 [19q13.12/19q13.12]  [t(19;19)(q13;q13)]  
Fusion: TCGAC19orf55 IGFLR1 19q13.12 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIGFLR1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IGFLR1
dbVarIGFLR1
ClinVarIGFLR1
1000_GenomesIGFLR1 
Exome Variant ServerIGFLR1
ExAC (Exome Aggregation Consortium)IGFLR1 (select the gene name)
Genetic variants : HAPMAP79713
Genomic Variants (DGV)IGFLR1 [DGVbeta]
DECIPHER (Syndromes)19:36230151-36233351  ENSG00000126246
CONAN: Copy Number AnalysisIGFLR1 
Mutations
ICGC Data PortalIGFLR1 
TCGA Data PortalIGFLR1 
Broad Tumor PortalIGFLR1
OASIS PortalIGFLR1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICIGFLR1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDIGFLR1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch IGFLR1
DgiDB (Drug Gene Interaction Database)IGFLR1
DoCM (Curated mutations)IGFLR1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IGFLR1 (select a term)
intoGenIGFLR1
Cancer3DIGFLR1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614143   
Orphanet
MedgenIGFLR1
Genetic Testing Registry IGFLR1
NextProtQ9H665 [Medical]
TSGene79713
GENETestsIGFLR1
Huge Navigator IGFLR1 [HugePedia]
snp3D : Map Gene to Disease79713
BioCentury BCIQIGFLR1
ClinGenIGFLR1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79713
Chemical/Pharm GKB GenePA134884390
Clinical trialIGFLR1
Miscellaneous
canSAR (ICR)IGFLR1 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineIGFLR1
EVEXIGFLR1
GoPubMedIGFLR1
iHOPIGFLR1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:04:53 CEST 2017

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