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IGFN1 (immunoglobulin-like and fibronectin type III domain containing 1)

Identity

Alias_symbol (synonym)DKFZp434B1231
EEF1A2BP1
Other alias
HGNC (Hugo) IGFN1
LocusID (NCBI) 91156
Atlas_Id 52141
Location 1q32.1  [Link to chromosome band 1q32]
Location_base_pair Starts at 201159953 and ends at 201198080 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CRB1 (1q31.3) / IGFN1 (1q32.1)IGFN1 (1q32.1) / KANK1 (9p24.3)PSMB4 (1q21.3) / IGFN1 (1q32.1)
CRB1 1q31.3 / IGFN1 1q32.1IGFN1 1q32.1 / KANK1 9p24.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)IGFN1   24607
Cards
Entrez_Gene (NCBI)IGFN1  91156  immunoglobulin-like and fibronectin type III domain containing 1
AliasesEEF1A2BP1
GeneCards (Weizmann)IGFN1
Ensembl hg19 (Hinxton)ENSG00000163395 [Gene_View]  chr1:201159953-201198080 [Contig_View]  IGFN1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000163395 [Gene_View]  chr1:201159953-201198080 [Contig_View]  IGFN1 [Vega]
ICGC DataPortalENSG00000163395
TCGA cBioPortalIGFN1
AceView (NCBI)IGFN1
Genatlas (Paris)IGFN1
WikiGenes91156
SOURCE (Princeton)IGFN1
Genetics Home Reference (NIH)IGFN1
Genomic and cartography
GoldenPath hg19 (UCSC)IGFN1  -     chr1:201159953-201198080 +  1q32.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)IGFN1  -     1q32.1   [Description]    (hg38-Dec_2013)
EnsemblIGFN1 - 1q32.1 [CytoView hg19]  IGFN1 - 1q32.1 [CytoView hg38]
Mapping of homologs : NCBIIGFN1 [Mapview hg19]  IGFN1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AL137493 AY245430 BC028184 BC033185 BC131529
RefSeq transcript (Entrez)NM_001164586 NM_178275
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_004487 NW_004929293
Consensus coding sequences : CCDS (NCBI)IGFN1
Cluster EST : UnigeneHs.519024 [ NCBI ]
CGAP (NCI)Hs.519024
Alternative Splicing GalleryENSG00000163395
Gene ExpressionIGFN1 [ NCBI-GEO ]   IGFN1 [ EBI - ARRAY_EXPRESS ]   IGFN1 [ SEEK ]   IGFN1 [ MEM ]
Gene Expression Viewer (FireBrowse)IGFN1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)91156
GTEX Portal (Tissue expression)IGFN1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86VF2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86VF2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86VF2
Splice isoforms : SwissVarQ86VF2
PhosPhoSitePlusQ86VF2
Domaine pattern : Prosite (Expaxy)FN3 (PS50853)    IG_LIKE (PS50835)   
Domains : Interpro (EBI)FN3_dom    Ig-like_dom    Ig-like_fold    Ig_I-set    Ig_sub    Ig_sub2   
Domain families : Pfam (Sanger)fn3 (PF00041)    I-set (PF07679)   
Domain families : Pfam (NCBI)pfam00041    pfam07679   
Domain families : Smart (EMBL)FN3 (SM00060)  IG (SM00409)  IGc2 (SM00408)  
Conserved Domain (NCBI)IGFN1
DMDM Disease mutations91156
Blocks (Seattle)IGFN1
SuperfamilyQ86VF2
Human Protein AtlasENSG00000163395
Peptide AtlasQ86VF2
HPRD16812
IPIIPI00902792   IPI00894394   IPI00385658   IPI00328885   
Protein Interaction databases
DIP (DOE-UCLA)Q86VF2
IntAct (EBI)Q86VF2
FunCoupENSG00000163395
BioGRIDIGFN1
STRING (EMBL)IGFN1
ZODIACIGFN1
Ontologies - Pathways
QuickGOQ86VF2
Ontology : AmiGOprotein binding  nucleus  biological_process  Z disc  
Ontology : EGO-EBIprotein binding  nucleus  biological_process  Z disc  
NDEx NetworkIGFN1
Atlas of Cancer Signalling NetworkIGFN1
Wikipedia pathwaysIGFN1
Orthology - Evolution
OrthoDB91156
GeneTree (enSembl)ENSG00000163395
Phylogenetic Trees/Animal Genes : TreeFamIGFN1
HOVERGENQ86VF2
HOGENOMQ86VF2
Homologs : HomoloGeneIGFN1
Homology/Alignments : Family Browser (UCSC)IGFN1
Gene fusions - Rearrangements
Fusion : MitelmanCRB1/IGFN1 [1q31.3/1q32.1]  [t(1;1)(q31;q32)]  
Fusion : MitelmanIGFN1/KANK1 [1q32.1/9p24.3]  [t(1;9)(q32;p24)]  
Fusion: TCGACRB1 1q31.3 IGFN1 1q32.1 LGG
Fusion: TCGAIGFN1 1q32.1 KANK1 9p24.3 LGG
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIGFN1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IGFN1
dbVarIGFN1
ClinVarIGFN1
1000_GenomesIGFN1 
Exome Variant ServerIGFN1
ExAC (Exome Aggregation Consortium)IGFN1 (select the gene name)
Genetic variants : HAPMAP91156
Genomic Variants (DGV)IGFN1 [DGVbeta]
DECIPHER (Syndromes)1:201159953-201198080  ENSG00000163395
CONAN: Copy Number AnalysisIGFN1 
Mutations
ICGC Data PortalIGFN1 
TCGA Data PortalIGFN1 
Broad Tumor PortalIGFN1
OASIS PortalIGFN1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICIGFN1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDIGFN1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch IGFN1
DgiDB (Drug Gene Interaction Database)IGFN1
DoCM (Curated mutations)IGFN1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IGFN1 (select a term)
intoGenIGFN1
Cancer3DIGFN1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenIGFN1
Genetic Testing Registry IGFN1
NextProtQ86VF2 [Medical]
TSGene91156
GENETestsIGFN1
Huge Navigator IGFN1 [HugePedia]
snp3D : Map Gene to Disease91156
BioCentury BCIQIGFN1
ClinGenIGFN1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD91156
Chemical/Pharm GKB GenePA162391896
Clinical trialIGFN1
Miscellaneous
canSAR (ICR)IGFN1 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineIGFN1
EVEXIGFN1
GoPubMedIGFN1
iHOPIGFN1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:10:26 CET 2017

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