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IGHD (immunoglobulin heavy constant delta)

Identity

Alias_symbol (synonym)FLJ00382
FLJ46727
MGC29633
Other alias-
HGNC (Hugo) IGHD
LocusID (NCBI) 3495
Atlas_Id 45806
Location 14_KI270846v1_alt  [Link to chromosome band 14]
Location_base_pair Starts at 306087 and ends at 373314 bp from pter ( according to hg38-Dec_2013)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)IGHD   5480
Cards
Entrez_Gene (NCBI)IGHD  3495  immunoglobulin heavy constant delta
Aliases
GeneCards (Weizmann)IGHD
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr14_KI270846v1_alt:306087-373314 [Contig_View]  IGHD [Vega]
TCGA cBioPortalIGHD
AceView (NCBI)IGHD
Genatlas (Paris)IGHD
WikiGenes3495
SOURCE (Princeton)IGHD
Genetics Home Reference (NIH)IGHD
Genomic and cartography
GoldenPath hg38 (UCSC)IGHD  -     chr14_KI270846v1_alt:306087-373314 -  14_KI270846v1_alt   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)IGHD  -     14_KI270846v1_alt   [Description]    (hg19-Feb_2009)
EnsemblIGHD - 14_KI270846v1_alt [CytoView hg19]  IGHD - 14_KI270846v1_alt [CytoView hg38]
Mapping of homologs : NCBIIGHD [Mapview hg19]  IGHD [Mapview hg38]
OMIM147170   
Gene and transcription
Genbank (Entrez)AK090461 AK126280 AK128568 AK128580 AK128614
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000014 NC_018925 NG_001019 NT_187600
Consensus coding sequences : CCDS (NCBI)IGHD
Cluster EST : UnigeneHs.510635 [ NCBI ]
CGAP (NCI)Hs.510635
Gene ExpressionIGHD [ NCBI-GEO ]   IGHD [ EBI - ARRAY_EXPRESS ]   IGHD [ SEEK ]   IGHD [ MEM ]
Gene Expression Viewer (FireBrowse)IGHD [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3495
GTEX Portal (Tissue expression)IGHD
Protein : pattern, domain, 3D structure
UniProt/SwissProtP01880   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP01880  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP01880
Splice isoforms : SwissVarP01880
PhosPhoSitePlusP01880
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)    IG_MHC (PS00290)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_fold    Ig/MHC_CS    Ig_C1-set    Immunoglobulin   
Domain families : Pfam (Sanger)C1-set (PF07654)    ig (PF00047)   
Domain families : Pfam (NCBI)pfam07654    pfam00047   
Domain families : Smart (EMBL)IGc1 (SM00407)  
Conserved Domain (NCBI)IGHD
DMDM Disease mutations3495
Blocks (Seattle)IGHD
PDB (SRS)1ZVO   
PDB (PDBSum)1ZVO   
PDB (IMB)1ZVO   
PDB (RSDB)1ZVO   
Structural Biology KnowledgeBase1ZVO   
SCOP (Structural Classification of Proteins)1ZVO   
CATH (Classification of proteins structures)1ZVO   
SuperfamilyP01880
Peptide AtlasP01880
IPIIPI00163446   IPI00829636   
Protein Interaction databases
DIP (DOE-UCLA)P01880
IntAct (EBI)P01880
BioGRIDIGHD
STRING (EMBL)IGHD
ZODIACIGHD
Ontologies - Pathways
QuickGOP01880
Ontology : AmiGOantigen binding  antigen binding  plasma membrane  phagocytosis, recognition  phagocytosis, engulfment  immune response  complement activation, classical pathway  external side of plasma membrane  integral component of membrane  immunoglobulin receptor binding  immunoglobulin complex, circulating  defense response to bacterium  innate immune response  B cell receptor signaling pathway  positive regulation of B cell activation  extracellular exosome  blood microparticle  
Ontology : EGO-EBIantigen binding  antigen binding  plasma membrane  phagocytosis, recognition  phagocytosis, engulfment  immune response  complement activation, classical pathway  external side of plasma membrane  integral component of membrane  immunoglobulin receptor binding  immunoglobulin complex, circulating  defense response to bacterium  innate immune response  B cell receptor signaling pathway  positive regulation of B cell activation  extracellular exosome  blood microparticle  
NDEx NetworkIGHD
Atlas of Cancer Signalling NetworkIGHD
Wikipedia pathwaysIGHD
Orthology - Evolution
OrthoDB3495
Phylogenetic Trees/Animal Genes : TreeFamIGHD
HOVERGENP01880
HOGENOMP01880
Homologs : HomoloGeneIGHD
Homology/Alignments : Family Browser (UCSC)IGHD
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIGHD [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IGHD
dbVarIGHD
ClinVarIGHD
1000_GenomesIGHD 
Exome Variant ServerIGHD
ExAC (Exome Aggregation Consortium)IGHD (select the gene name)
Genetic variants : HAPMAP3495
Genomic Variants (DGV)IGHD [DGVbeta]
DECIPHERIGHD [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisIGHD 
Mutations
ICGC Data PortalIGHD 
TCGA Data PortalIGHD 
Broad Tumor PortalIGHD
OASIS PortalIGHD [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDIGHD
BioMutasearch IGHD
DgiDB (Drug Gene Interaction Database)IGHD
DoCM (Curated mutations)IGHD (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IGHD (select a term)
intoGenIGHD
Cancer3DIGHD(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM147170   
Orphanet
MedgenIGHD
Genetic Testing Registry IGHD
NextProtP01880 [Medical]
TSGene3495
GENETestsIGHD
Target ValidationIGHD
Huge Navigator IGHD [HugePedia]
snp3D : Map Gene to Disease3495
BioCentury BCIQIGHD
ClinGenIGHD
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD3495
Chemical/Pharm GKB GenePA29712
Clinical trialIGHD
Miscellaneous
canSAR (ICR)IGHD (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineIGHD
EVEXIGHD
GoPubMedIGHD
iHOPIGHD
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:38:10 CEST 2017

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