| Nomenclature |
|---|
| HGNC (Hugo) | IGHD 5480 |
| Cards |
|---|
| Entrez_Gene (NCBI) | IGHD 3495 immunoglobulin heavy constant delta |
| Aliases | |
| GeneCards (Weizmann) | IGHD |
| Ensembl hg19 (Hinxton) | [Gene_View] |
| Ensembl hg38 (Hinxton) | [Gene_View] chr14_KI270846v1_alt:306087-373314 [Contig_View] IGHD [Vega] |
| TCGA cBioPortal | IGHD |
| AceView (NCBI) | IGHD |
| Genatlas (Paris) | IGHD |
| WikiGenes | 3495 |
| SOURCE (Princeton) | IGHD |
| Genetics Home Reference (NIH) | IGHD |
| Genomic and cartography |
|---|
| GoldenPath hg38 (UCSC) | IGHD - chr14_KI270846v1_alt:306087-373314 - 14_KI270846v1_alt [Description] (hg38-Dec_2013) |
| GoldenPath hg19 (UCSC) | IGHD - 14_KI270846v1_alt [Description] (hg19-Feb_2009) |
| Ensembl | IGHD - 14_KI270846v1_alt [CytoView hg19] IGHD - 14_KI270846v1_alt [CytoView hg38] |
| Mapping of homologs : NCBI | IGHD [Mapview hg19] IGHD [Mapview hg38] |
| OMIM | 147170 |
| Gene and transcription |
|---|
| Genbank (Entrez) | AK090461 AK126280 AK128568 AK128580 AK128614 |
| RefSeq transcript (Entrez) | |
| RefSeq genomic (Entrez) | NC_000014 NC_018925 NG_001019 NT_187600 |
| Consensus coding sequences : CCDS (NCBI) | IGHD |
| Cluster EST : Unigene | Hs.510635 [ NCBI ] |
| CGAP (NCI) | Hs.510635 |
| Gene Expression | IGHD [ NCBI-GEO ] IGHD [ EBI - ARRAY_EXPRESS ]
IGHD [ SEEK ] IGHD [ MEM ] |
| Gene Expression Viewer (FireBrowse) | IGHD [ Firebrowse - Broad ] |
| SOURCE (Princeton) | Expression in : [Datasets] [Normal Tissue Atlas] [carcinoma Classsification] [NCI60] |
| Genevisible | Expression in : [tissues] [cell-lines] [cancer] [perturbations] |
| BioGPS (Tissue expression) | 3495 |
| GTEX Portal (Tissue expression) | IGHD |
| Protein : pattern, domain, 3D structure |
|---|
| UniProt/SwissProt | P01880 [function] [subcellular_location] [family_and_domains] [pathology_and_biotech] [ptm_processing] [expression] [interaction] |
| NextProt | P01880 [Sequence] [Exons] [Medical] [Publications] |
| With graphics : InterPro | P01880 |
| Splice isoforms : SwissVar | P01880 |
| PhosPhoSitePlus | P01880 |
| Domaine pattern : Prosite (Expaxy) | IG_LIKE (PS50835) IG_MHC (PS00290) |
| Domains : Interpro (EBI) | Ig-like_dom Ig-like_fold Ig/MHC_CS Ig_C1-set Immunoglobulin |
| Domain families : Pfam (Sanger) | C1-set (PF07654) ig (PF00047) |
| Domain families : Pfam (NCBI) | pfam07654 pfam00047 |
| Domain families : Smart (EMBL) | IGc1 (SM00407) |
| Conserved Domain (NCBI) | IGHD |
| DMDM Disease mutations | 3495 |
| Blocks (Seattle) | IGHD |
| PDB (SRS) | 1ZVO |
| PDB (PDBSum) | 1ZVO |
| PDB (IMB) | 1ZVO |
| PDB (RSDB) | 1ZVO |
| Structural Biology KnowledgeBase | 1ZVO |
| SCOP (Structural Classification of Proteins) | 1ZVO |
| CATH (Classification of proteins structures) | 1ZVO |
| Superfamily | P01880 |
| Peptide Atlas | P01880 |
| IPI | IPI00163446 IPI00829636 |
| Protein Interaction databases |
|---|
| DIP (DOE-UCLA) | P01880 |
| IntAct (EBI) | P01880 |
| BioGRID | IGHD |
| STRING (EMBL) | IGHD |
| ZODIAC | IGHD |
| Ontologies - Pathways |
|---|
| QuickGO | P01880 |
| Ontology : AmiGO | antigen binding antigen binding plasma membrane phagocytosis, recognition phagocytosis, engulfment immune response complement activation, classical pathway external side of plasma membrane integral component of membrane immunoglobulin receptor binding immunoglobulin complex, circulating defense response to bacterium innate immune response B cell receptor signaling pathway positive regulation of B cell activation extracellular exosome blood microparticle |
| Ontology : EGO-EBI | antigen binding antigen binding plasma membrane phagocytosis, recognition phagocytosis, engulfment immune response complement activation, classical pathway external side of plasma membrane integral component of membrane immunoglobulin receptor binding immunoglobulin complex, circulating defense response to bacterium innate immune response B cell receptor signaling pathway positive regulation of B cell activation extracellular exosome blood microparticle |
| NDEx Network | IGHD |
| Atlas of Cancer Signalling Network | IGHD |
| Wikipedia pathways | IGHD |
| Orthology - Evolution |
|---|
| OrthoDB | 3495 |
| Phylogenetic Trees/Animal Genes : TreeFam | IGHD |
| HOVERGEN | P01880 |
| HOGENOM | P01880 |
| Homologs : HomoloGene | IGHD |
| Homology/Alignments : Family Browser (UCSC) | IGHD |
| Gene fusions - Rearrangements |
|---|
| Polymorphisms : SNP and Copy number variants |
|---|
| NCBI Variation Viewer | IGHD [hg38] |
| dbSNP Single Nucleotide Polymorphism (NCBI) | IGHD |
| dbVar | IGHD |
| ClinVar | IGHD |
| 1000_Genomes | IGHD |
| Exome Variant Server | IGHD |
| ExAC (Exome Aggregation Consortium) | IGHD (select the gene name) |
| Genetic variants : HAPMAP | 3495 |
| Genomic Variants (DGV) | IGHD [DGVbeta] |
| DECIPHER | IGHD [patients] [syndromes] [variants] [genes] |
| CONAN: Copy Number Analysis | IGHD |
| Mutations |
|---|
| ICGC Data Portal | IGHD |
| TCGA Data Portal | IGHD |
| Broad Tumor Portal | IGHD |
| OASIS Portal | IGHD [ Somatic mutations - Copy number] |
| Mutations and Diseases : HGMD | IGHD |
| BioMuta | search IGHD |
| DgiDB (Drug Gene Interaction Database) | IGHD |
| DoCM (Curated mutations) | IGHD (select the gene name) |
| CIViC (Clinical Interpretations of Variants in Cancer) | IGHD (select a term) |
| intoGen | IGHD |
| Cancer3D | IGHD(select the gene name) |
| Impact of mutations | [PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser] |
| Diseases |
|---|
| OMIM | 147170 |
| Orphanet | |
| Medgen | IGHD |
| Genetic Testing Registry | IGHD
|
| NextProt | P01880 [Medical] |
| TSGene | 3495 |
| GENETests | IGHD |
| Target Validation | IGHD |
| Huge Navigator |
IGHD [HugePedia] |
| snp3D : Map Gene to Disease | 3495 |
| BioCentury BCIQ | IGHD |
| ClinGen | IGHD |
| Clinical trials, drugs, therapy |
|---|
| Chemical/Protein Interactions : CTD | 3495 |
| Chemical/Pharm GKB Gene | PA29712 |
| Clinical trial | IGHD |
| Miscellaneous |
|---|
| canSAR (ICR) | IGHD (select the gene name) |
| Probes |
|---|
| Litterature |
|---|
| PubMed | 18 Pubmed reference(s) in Entrez |
| GeneRIFs | Gene References Into Functions (Entrez) |
| CoreMine | IGHD |
| EVEX | IGHD |
| GoPubMed | IGHD |
| iHOP | IGHD |
