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IGHV1-69 (immunoglobulin heavy variable 1-69)

Identity

Alias_namesIGHV1-E
Other aliasIGHV169
IGHV1E
HGNC (Hugo) IGHV1-69
LocusID (NCBI) 28461
Atlas_Id 64551
Location 14_KI270846v1_alt  [Link to chromosome band 14]
Location_base_pair Starts at 1228795 and ends at 1228907 bp from pter ( according to hg38-Dec_2013)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)IGHV1-69   5558
Cards
Entrez_Gene (NCBI)IGHV1-69  28461  immunoglobulin heavy variable 1-69
AliasesIGHV1-E; IGHV169; IGHV1E
GeneCards (Weizmann)IGHV1-69
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr14_KI270846v1_alt:1228795-1228907 [Contig_View]  IGHV1-69 [Vega]
TCGA cBioPortalIGHV1-69
AceView (NCBI)IGHV1-69
Genatlas (Paris)IGHV1-69
WikiGenes28461
SOURCE (Princeton)IGHV1-69
Genetics Home Reference (NIH)IGHV1-69
Genomic and cartography
GoldenPath hg38 (UCSC)IGHV1-69  -     chr14_KI270846v1_alt:1228795-1228907 -  14_KI270846v1_alt   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)IGHV1-69  -     14_KI270846v1_alt   [Description]    (hg19-Feb_2009)
EnsemblIGHV1-69 - 14_KI270846v1_alt [CytoView hg19]  IGHV1-69 - 14_KI270846v1_alt [CytoView hg38]
Mapping of homologs : NCBIIGHV1-69 [Mapview hg19]  IGHV1-69 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF035025 BC070333
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000014 NC_018925 NG_001019 NT_187600
Consensus coding sequences : CCDS (NCBI)IGHV1-69
Cluster EST : UnigeneHs.704366 [ NCBI ]
CGAP (NCI)Hs.704366
Gene ExpressionIGHV1-69 [ NCBI-GEO ]   IGHV1-69 [ EBI - ARRAY_EXPRESS ]   IGHV1-69 [ SEEK ]   IGHV1-69 [ MEM ]
Gene Expression Viewer (FireBrowse)IGHV1-69 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)28461
GTEX Portal (Tissue expression)IGHV1-69
Protein : pattern, domain, 3D structure
UniProt/SwissProtP01742   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP01742  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP01742
Splice isoforms : SwissVarP01742
PhosPhoSitePlusP01742
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_fold    Ig_V-set   
Domain families : Pfam (Sanger)V-set (PF07686)   
Domain families : Pfam (NCBI)pfam07686   
Domain families : Smart (EMBL)IGv (SM00406)  
Conserved Domain (NCBI)IGHV1-69
DMDM Disease mutations28461
Blocks (Seattle)IGHV1-69
SuperfamilyP01742
Peptide AtlasP01742
IPIIPI00786926   
Protein Interaction databases
DIP (DOE-UCLA)P01742
IntAct (EBI)P01742
BioGRIDIGHV1-69
STRING (EMBL)IGHV1-69
ZODIACIGHV1-69
Ontologies - Pathways
QuickGOP01742
Ontology : AmiGOantigen binding  serine-type endopeptidase activity  extracellular region  extracellular region  plasma membrane  proteolysis  receptor-mediated endocytosis  immune response  complement activation  complement activation, classical pathway  Fc-epsilon receptor signaling pathway  Fc-gamma receptor signaling pathway involved in phagocytosis  regulation of immune response  leukocyte migration  
Ontology : EGO-EBIantigen binding  serine-type endopeptidase activity  extracellular region  extracellular region  plasma membrane  proteolysis  receptor-mediated endocytosis  immune response  complement activation  complement activation, classical pathway  Fc-epsilon receptor signaling pathway  Fc-gamma receptor signaling pathway involved in phagocytosis  regulation of immune response  leukocyte migration  
NDEx NetworkIGHV1-69
Atlas of Cancer Signalling NetworkIGHV1-69
Wikipedia pathwaysIGHV1-69
Orthology - Evolution
OrthoDB28461
Phylogenetic Trees/Animal Genes : TreeFamIGHV1-69
HOVERGENP01742
HOGENOMP01742
Homologs : HomoloGeneIGHV1-69
Homology/Alignments : Family Browser (UCSC)IGHV1-69
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIGHV1-69 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IGHV1-69
dbVarIGHV1-69
ClinVarIGHV1-69
1000_GenomesIGHV1-69 
Exome Variant ServerIGHV1-69
ExAC (Exome Aggregation Consortium)IGHV1-69 (select the gene name)
Genetic variants : HAPMAP28461
Genomic Variants (DGV)IGHV1-69 [DGVbeta]
DECIPHERIGHV1-69 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisIGHV1-69 
Mutations
ICGC Data PortalIGHV1-69 
TCGA Data PortalIGHV1-69 
Broad Tumor PortalIGHV1-69
OASIS PortalIGHV1-69 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDIGHV1-69
BioMutasearch IGHV1-69
DgiDB (Drug Gene Interaction Database)IGHV1-69
DoCM (Curated mutations)IGHV1-69 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IGHV1-69 (select a term)
intoGenIGHV1-69
Cancer3DIGHV1-69(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenIGHV1-69
Genetic Testing Registry IGHV1-69
NextProtP01742 [Medical]
TSGene28461
GENETestsIGHV1-69
Target ValidationIGHV1-69
Huge Navigator IGHV1-69 [HugePedia]
snp3D : Map Gene to Disease28461
BioCentury BCIQIGHV1-69
ClinGenIGHV1-69
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD28461
Chemical/Pharm GKB GenePA35160
Clinical trialIGHV1-69
Miscellaneous
canSAR (ICR)IGHV1-69 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineIGHV1-69
EVEXIGHV1-69
GoPubMedIGHV1-69
iHOPIGHV1-69
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:11:02 CEST 2017

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