Atlas of Genetics and Cytogenetics in Oncology and Haematology


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IGHV1OR15-1 (immunoglobulin heavy variable 1/OR15-1 (non-functional))

Identity

Alias_namesimmunoglobulin heavy variable 1/OR15-1
immunoglobulin heavy variable 1/OR15-1 pseudogene
immunoglobulin heavy variable 1/OR15-1 (pseudogene)
Alias_symbol (synonym)IGHV1/OR15-1
Other aliasIGHV1OR151
HGNC (Hugo) IGHV1OR15-1
LocusID (NCBI) 388077
Atlas_Id 78460
Location 15q11.2  [Link to chromosome band 15q11]
Location_base_pair Starts at 21717666 and ends at 21718307 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)IGHV1OR15-1   5563
Cards
Entrez_Gene (NCBI)IGHV1OR15-1  388077  immunoglobulin heavy variable 1/OR15-1 (non-functional)
AliasesIGHV1/OR15-1; IGHV1OR151
GeneCards (Weizmann)IGHV1OR15-1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr15:21717666-21718307 [Contig_View]  IGHV1OR15-1 [Vega]
TCGA cBioPortalIGHV1OR15-1
AceView (NCBI)IGHV1OR15-1
Genatlas (Paris)IGHV1OR15-1
WikiGenes388077
SOURCE (Princeton)IGHV1OR15-1
Genetics Home Reference (NIH)IGHV1OR15-1
Genomic and cartography
GoldenPath hg38 (UCSC)IGHV1OR15-1  -     chr15:21717666-21718307 -  15q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)IGHV1OR15-1  -     15q11.2   [Description]    (hg19-Feb_2009)
GoldenPathIGHV1OR15-1 - 15q11.2 [CytoView hg19]  IGHV1OR15-1 - 15q11.2 [CytoView hg38]
Mapping of homologs : NCBIIGHV1OR15-1 [Mapview hg19]  IGHV1OR15-1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI201426 HY100667
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)IGHV1OR15-1
Cluster EST : UnigeneHs.458446 [ NCBI ]
CGAP (NCI)Hs.458446
Gene ExpressionIGHV1OR15-1 [ NCBI-GEO ]   IGHV1OR15-1 [ EBI - ARRAY_EXPRESS ]   IGHV1OR15-1 [ SEEK ]   IGHV1OR15-1 [ MEM ]
Gene Expression Viewer (FireBrowse)IGHV1OR15-1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)388077
GTEX Portal (Tissue expression)IGHV1OR15-1
Protein : pattern, domain, 3D structure
UniProt/SwissProtP23083   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP23083  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP23083
Splice isoforms : SwissVarP23083
PhosPhoSitePlusP23083
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_dom_sf    Ig-like_fold    Ig_V-set   
Domain families : Pfam (Sanger)V-set (PF07686)   
Domain families : Pfam (NCBI)pfam07686   
Domain families : Smart (EMBL)IGv (SM00406)  
Conserved Domain (NCBI)IGHV1OR15-1
DMDM Disease mutations388077
Blocks (Seattle)IGHV1OR15-1
PDB (RSDB)1WT5   
PDB Europe1WT5   
PDB (PDBSum)1WT5   
PDB (IMB)1WT5   
Structural Biology KnowledgeBase1WT5   
SCOP (Structural Classification of Proteins)1WT5   
CATH (Classification of proteins structures)1WT5   
SuperfamilyP23083
Peptide AtlasP23083
IPIIPI00009792   
Protein Interaction databases
DIP (DOE-UCLA)P23083
IntAct (EBI)P23083
BioGRIDIGHV1OR15-1
STRING (EMBL)IGHV1OR15-1
ZODIACIGHV1OR15-1
Ontologies - Pathways
QuickGOP23083
Ontology : AmiGOantigen binding  antigen binding  extracellular region  extracellular region  plasma membrane  receptor-mediated endocytosis  phagocytosis, recognition  phagocytosis, engulfment  immune response  complement activation  complement activation, classical pathway  complement activation, classical pathway  external side of plasma membrane  regulation of complement activation  immunoglobulin receptor binding  Fc-epsilon receptor signaling pathway  Fc-gamma receptor signaling pathway involved in phagocytosis  immunoglobulin complex, circulating  defense response to bacterium  innate immune response  regulation of immune response  B cell receptor signaling pathway  positive regulation of B cell activation  leukocyte migration  
Ontology : EGO-EBIantigen binding  antigen binding  extracellular region  extracellular region  plasma membrane  receptor-mediated endocytosis  phagocytosis, recognition  phagocytosis, engulfment  immune response  complement activation  complement activation, classical pathway  complement activation, classical pathway  external side of plasma membrane  regulation of complement activation  immunoglobulin receptor binding  Fc-epsilon receptor signaling pathway  Fc-gamma receptor signaling pathway involved in phagocytosis  immunoglobulin complex, circulating  defense response to bacterium  innate immune response  regulation of immune response  B cell receptor signaling pathway  positive regulation of B cell activation  leukocyte migration  
NDEx NetworkIGHV1OR15-1
Atlas of Cancer Signalling NetworkIGHV1OR15-1
Wikipedia pathwaysIGHV1OR15-1
Orthology - Evolution
OrthoDB388077
Phylogenetic Trees/Animal Genes : TreeFamIGHV1OR15-1
HOGENOMP23083
Homologs : HomoloGeneIGHV1OR15-1
Homology/Alignments : Family Browser (UCSC)IGHV1OR15-1
Gene fusions - Rearrangements
Fusion : QuiverIGHV1OR15-1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIGHV1OR15-1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IGHV1OR15-1
dbVarIGHV1OR15-1
ClinVarIGHV1OR15-1
1000_GenomesIGHV1OR15-1 
Exome Variant ServerIGHV1OR15-1
Varsome BrowserIGHV1OR15-1
Genetic variants : HAPMAP388077
Genomic Variants (DGV)IGHV1OR15-1 [DGVbeta]
DECIPHERIGHV1OR15-1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisIGHV1OR15-1 
Mutations
ICGC Data PortalIGHV1OR15-1 
TCGA Data PortalIGHV1OR15-1 
Broad Tumor PortalIGHV1OR15-1
OASIS PortalIGHV1OR15-1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICIGHV1OR15-1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DIGHV1OR15-1
Mutations and Diseases : HGMDIGHV1OR15-1
BioMutasearch IGHV1OR15-1
DgiDB (Drug Gene Interaction Database)IGHV1OR15-1
DoCM (Curated mutations)IGHV1OR15-1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IGHV1OR15-1 (select a term)
intoGenIGHV1OR15-1
Cancer3DIGHV1OR15-1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETIGHV1OR15-1
MedgenIGHV1OR15-1
Genetic Testing Registry IGHV1OR15-1
NextProtP23083 [Medical]
TSGene388077
GENETestsIGHV1OR15-1
Target ValidationIGHV1OR15-1
Huge Navigator IGHV1OR15-1 [HugePedia]
snp3D : Map Gene to Disease388077
BioCentury BCIQIGHV1OR15-1
ClinGenIGHV1OR15-1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD388077
Chemical/Pharm GKB GenePA35164
Clinical trialIGHV1OR15-1
Miscellaneous
canSAR (ICR)IGHV1OR15-1 (select the gene name)
DataMed IndexIGHV1OR15-1
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineIGHV1OR15-1
EVEXIGHV1OR15-1
GoPubMedIGHV1OR15-1
iHOPIGHV1OR15-1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Sep 3 15:31:47 CEST 2019

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