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IGHV1OR15-1 (immunoglobulin heavy variable 1/OR15-1 (non-functional))

Identity

Alias_namesimmunoglobulin heavy variable 1/OR15-1
immunoglobulin heavy variable 1/OR15-1 pseudogene
immunoglobulin heavy variable 1/OR15-1 (pseudogene)
Alias_symbol (synonym)IGHV1/OR15-1
Other aliasIGHV1OR151
HGNC (Hugo) IGHV1OR15-1
LocusID (NCBI) 388077
Atlas_Id 78460
Location 15q11.2  [Link to chromosome band 15q11]
Location_base_pair Starts at 21717666 and ends at 21718307 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)IGHV1OR15-1   5563
Cards
Entrez_Gene (NCBI)IGHV1OR15-1  388077  immunoglobulin heavy variable 1/OR15-1 (non-functional)
AliasesIGHV1/OR15-1; IGHV1OR151
GeneCards (Weizmann)IGHV1OR15-1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr15:21717666-21718307 [Contig_View]  IGHV1OR15-1 [Vega]
TCGA cBioPortalIGHV1OR15-1
AceView (NCBI)IGHV1OR15-1
Genatlas (Paris)IGHV1OR15-1
WikiGenes388077
SOURCE (Princeton)IGHV1OR15-1
Genetics Home Reference (NIH)IGHV1OR15-1
Genomic and cartography
GoldenPath hg38 (UCSC)IGHV1OR15-1  -     chr15:21717666-21718307 -  15q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)IGHV1OR15-1  -     15q11.2   [Description]    (hg19-Feb_2009)
EnsemblIGHV1OR15-1 - 15q11.2 [CytoView hg19]  IGHV1OR15-1 - 15q11.2 [CytoView hg38]
Mapping of homologs : NCBIIGHV1OR15-1 [Mapview hg19]  IGHV1OR15-1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI201426 HY100667
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)IGHV1OR15-1
Cluster EST : UnigeneHs.458446 [ NCBI ]
CGAP (NCI)Hs.458446
Gene ExpressionIGHV1OR15-1 [ NCBI-GEO ]   IGHV1OR15-1 [ EBI - ARRAY_EXPRESS ]   IGHV1OR15-1 [ SEEK ]   IGHV1OR15-1 [ MEM ]
Gene Expression Viewer (FireBrowse)IGHV1OR15-1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)388077
GTEX Portal (Tissue expression)IGHV1OR15-1
Protein : pattern, domain, 3D structure
UniProt/SwissProtP23083   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP23083  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP23083
Splice isoforms : SwissVarP23083
PhosPhoSitePlusP23083
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_fold    Ig_V-set   
Domain families : Pfam (Sanger)V-set (PF07686)   
Domain families : Pfam (NCBI)pfam07686   
Domain families : Smart (EMBL)IGv (SM00406)  
Conserved Domain (NCBI)IGHV1OR15-1
DMDM Disease mutations388077
Blocks (Seattle)IGHV1OR15-1
PDB (SRS)1WT5   
PDB (PDBSum)1WT5   
PDB (IMB)1WT5   
PDB (RSDB)1WT5   
Structural Biology KnowledgeBase1WT5   
SCOP (Structural Classification of Proteins)1WT5   
CATH (Classification of proteins structures)1WT5   
SuperfamilyP23083
Peptide AtlasP23083
IPIIPI00009792   
Protein Interaction databases
DIP (DOE-UCLA)P23083
IntAct (EBI)P23083
BioGRIDIGHV1OR15-1
STRING (EMBL)IGHV1OR15-1
ZODIACIGHV1OR15-1
Ontologies - Pathways
QuickGOP23083
Ontology : AmiGOantigen binding  serine-type endopeptidase activity  extracellular region  extracellular region  plasma membrane  proteolysis  receptor-mediated endocytosis  immune response  complement activation  complement activation, classical pathway  Fc-epsilon receptor signaling pathway  Fc-gamma receptor signaling pathway involved in phagocytosis  regulation of immune response  leukocyte migration  
Ontology : EGO-EBIantigen binding  serine-type endopeptidase activity  extracellular region  extracellular region  plasma membrane  proteolysis  receptor-mediated endocytosis  immune response  complement activation  complement activation, classical pathway  Fc-epsilon receptor signaling pathway  Fc-gamma receptor signaling pathway involved in phagocytosis  regulation of immune response  leukocyte migration  
NDEx NetworkIGHV1OR15-1
Atlas of Cancer Signalling NetworkIGHV1OR15-1
Wikipedia pathwaysIGHV1OR15-1
Orthology - Evolution
OrthoDB388077
Phylogenetic Trees/Animal Genes : TreeFamIGHV1OR15-1
HOVERGENP23083
HOGENOMP23083
Homologs : HomoloGeneIGHV1OR15-1
Homology/Alignments : Family Browser (UCSC)IGHV1OR15-1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIGHV1OR15-1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IGHV1OR15-1
dbVarIGHV1OR15-1
ClinVarIGHV1OR15-1
1000_GenomesIGHV1OR15-1 
Exome Variant ServerIGHV1OR15-1
ExAC (Exome Aggregation Consortium)IGHV1OR15-1 (select the gene name)
Genetic variants : HAPMAP388077
Genomic Variants (DGV)IGHV1OR15-1 [DGVbeta]
DECIPHERIGHV1OR15-1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisIGHV1OR15-1 
Mutations
ICGC Data PortalIGHV1OR15-1 
TCGA Data PortalIGHV1OR15-1 
Broad Tumor PortalIGHV1OR15-1
OASIS PortalIGHV1OR15-1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICIGHV1OR15-1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDIGHV1OR15-1
BioMutasearch IGHV1OR15-1
DgiDB (Drug Gene Interaction Database)IGHV1OR15-1
DoCM (Curated mutations)IGHV1OR15-1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IGHV1OR15-1 (select a term)
intoGenIGHV1OR15-1
Cancer3DIGHV1OR15-1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenIGHV1OR15-1
Genetic Testing Registry IGHV1OR15-1
NextProtP23083 [Medical]
TSGene388077
GENETestsIGHV1OR15-1
Huge Navigator IGHV1OR15-1 [HugePedia]
snp3D : Map Gene to Disease388077
BioCentury BCIQIGHV1OR15-1
ClinGenIGHV1OR15-1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD388077
Chemical/Pharm GKB GenePA35164
Clinical trialIGHV1OR15-1
Miscellaneous
canSAR (ICR)IGHV1OR15-1 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineIGHV1OR15-1
EVEXIGHV1OR15-1
GoPubMedIGHV1OR15-1
iHOPIGHV1OR15-1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:16:37 CEST 2017

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