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IGHV3-23 (immunoglobulin heavy variable 3-23)

Identity

Other aliasDP47
IGHV323
V3-23
VH26
HGNC (Hugo) IGHV3-23
LocusID (NCBI) 28442
Atlas_Id 64552
Location 14_KI270846v1_alt  [Link to chromosome band 14]
Location_base_pair Starts at 331584 and ends at 736670 bp from pter ( according to hg38-Dec_2013)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)IGHV3-23   5588
Cards
Entrez_Gene (NCBI)IGHV3-23  28442  immunoglobulin heavy variable 3-23
AliasesDP47; IGHV323; V3-23; VH26
GeneCards (Weizmann)IGHV3-23
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr14_KI270846v1_alt:331584-736670 [Contig_View]  IGHV3-23 [Vega]
TCGA cBioPortalIGHV3-23
AceView (NCBI)IGHV3-23
Genatlas (Paris)IGHV3-23
WikiGenes28442
SOURCE (Princeton)IGHV3-23
Genetics Home Reference (NIH)IGHV3-23
Genomic and cartography
GoldenPath hg38 (UCSC)IGHV3-23  -     chr14_KI270846v1_alt:331584-736670 -  14_KI270846v1_alt   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)IGHV3-23  -     14_KI270846v1_alt   [Description]    (hg19-Feb_2009)
EnsemblIGHV3-23 - 14_KI270846v1_alt [CytoView hg19]  IGHV3-23 - 14_KI270846v1_alt [CytoView hg38]
Mapping of homologs : NCBIIGHV3-23 [Mapview hg19]  IGHV3-23 [Mapview hg38]
OMIM611939   
Gene and transcription
Genbank (Entrez)AF231396 AJ519334 X14584
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000014 NC_018925 NG_001019 NT_187600
Consensus coding sequences : CCDS (NCBI)IGHV3-23
Cluster EST : UnigeneHs.719895 [ NCBI ]
CGAP (NCI)Hs.719895
Gene ExpressionIGHV3-23 [ NCBI-GEO ]   IGHV3-23 [ EBI - ARRAY_EXPRESS ]   IGHV3-23 [ SEEK ]   IGHV3-23 [ MEM ]
Gene Expression Viewer (FireBrowse)IGHV3-23 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)28442
GTEX Portal (Tissue expression)IGHV3-23
Protein : pattern, domain, 3D structure
UniProt/SwissProtP01764   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP01764  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP01764
Splice isoforms : SwissVarP01764
PhosPhoSitePlusP01764
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_fold    Ig_V-set   
Domain families : Pfam (Sanger)V-set (PF07686)   
Domain families : Pfam (NCBI)pfam07686   
Domain families : Smart (EMBL)IGv (SM00406)  
Conserved Domain (NCBI)IGHV3-23
DMDM Disease mutations28442
Blocks (Seattle)IGHV3-23
PDB (SRS)1HOU    1OHQ    3BN9    3UPC    3ZHD    3ZHK    3ZHL    4KFZ   
PDB (PDBSum)1HOU    1OHQ    3BN9    3UPC    3ZHD    3ZHK    3ZHL    4KFZ   
PDB (IMB)1HOU    1OHQ    3BN9    3UPC    3ZHD    3ZHK    3ZHL    4KFZ   
PDB (RSDB)1HOU    1OHQ    3BN9    3UPC    3ZHD    3ZHK    3ZHL    4KFZ   
Structural Biology KnowledgeBase1HOU    1OHQ    3BN9    3UPC    3ZHD    3ZHK    3ZHL    4KFZ   
SCOP (Structural Classification of Proteins)1HOU    1OHQ    3BN9    3UPC    3ZHD    3ZHK    3ZHL    4KFZ   
CATH (Classification of proteins structures)1HOU    1OHQ    3BN9    3UPC    3ZHD    3ZHK    3ZHL    4KFZ   
SuperfamilyP01764
Peptide AtlasP01764
IPIIPI00827940   
Protein Interaction databases
DIP (DOE-UCLA)P01764
IntAct (EBI)P01764
BioGRIDIGHV3-23
STRING (EMBL)IGHV3-23
ZODIACIGHV3-23
Ontologies - Pathways
QuickGOP01764
Ontology : AmiGOantigen binding  antigen binding  serine-type endopeptidase activity  extracellular region  extracellular region  extracellular space  plasma membrane  proteolysis  receptor-mediated endocytosis  phagocytosis, recognition  phagocytosis, engulfment  immune response  complement activation  complement activation, classical pathway  complement activation, classical pathway  external side of plasma membrane  immunoglobulin receptor binding  Fc-epsilon receptor signaling pathway  Fc-gamma receptor signaling pathway involved in phagocytosis  immunoglobulin complex, circulating  defense response to bacterium  innate immune response  regulation of immune response  B cell receptor signaling pathway  positive regulation of B cell activation  leukocyte migration  extracellular exosome  blood microparticle  
Ontology : EGO-EBIantigen binding  antigen binding  serine-type endopeptidase activity  extracellular region  extracellular region  extracellular space  plasma membrane  proteolysis  receptor-mediated endocytosis  phagocytosis, recognition  phagocytosis, engulfment  immune response  complement activation  complement activation, classical pathway  complement activation, classical pathway  external side of plasma membrane  immunoglobulin receptor binding  Fc-epsilon receptor signaling pathway  Fc-gamma receptor signaling pathway involved in phagocytosis  immunoglobulin complex, circulating  defense response to bacterium  innate immune response  regulation of immune response  B cell receptor signaling pathway  positive regulation of B cell activation  leukocyte migration  extracellular exosome  blood microparticle  
NDEx NetworkIGHV3-23
Atlas of Cancer Signalling NetworkIGHV3-23
Wikipedia pathwaysIGHV3-23
Orthology - Evolution
OrthoDB28442
Phylogenetic Trees/Animal Genes : TreeFamIGHV3-23
HOVERGENP01764
HOGENOMP01764
Homologs : HomoloGeneIGHV3-23
Homology/Alignments : Family Browser (UCSC)IGHV3-23
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIGHV3-23 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IGHV3-23
dbVarIGHV3-23
ClinVarIGHV3-23
1000_GenomesIGHV3-23 
Exome Variant ServerIGHV3-23
ExAC (Exome Aggregation Consortium)IGHV3-23 (select the gene name)
Genetic variants : HAPMAP28442
Genomic Variants (DGV)IGHV3-23 [DGVbeta]
DECIPHERIGHV3-23 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisIGHV3-23 
Mutations
ICGC Data PortalIGHV3-23 
TCGA Data PortalIGHV3-23 
Broad Tumor PortalIGHV3-23
OASIS PortalIGHV3-23 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDIGHV3-23
BioMutasearch IGHV3-23
DgiDB (Drug Gene Interaction Database)IGHV3-23
DoCM (Curated mutations)IGHV3-23 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IGHV3-23 (select a term)
intoGenIGHV3-23
Cancer3DIGHV3-23(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611939   
Orphanet
MedgenIGHV3-23
Genetic Testing Registry IGHV3-23
NextProtP01764 [Medical]
TSGene28442
GENETestsIGHV3-23
Target ValidationIGHV3-23
Huge Navigator IGHV3-23 [HugePedia]
snp3D : Map Gene to Disease28442
BioCentury BCIQIGHV3-23
ClinGenIGHV3-23
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD28442
Chemical/Pharm GKB GenePA35188
Clinical trialIGHV3-23
Miscellaneous
canSAR (ICR)IGHV3-23 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineIGHV3-23
EVEXIGHV3-23
GoPubMedIGHV3-23
iHOPIGHV3-23
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:53:14 CEST 2017

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