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IGHV3-30 (immunoglobulin heavy variable 3-30)

Identity

Other aliasIGHV330
VH
HGNC (Hugo) IGHV3-30
LocusID (NCBI) 28439
Atlas_Id 64553
Location 14_KI270846v1_alt  [Link to chromosome band 14]
Location_base_pair Starts at 331985 and ends at 851764 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
IGHV3-30 (14q32.33) / IGKC (2p11.2)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)IGHV3-30   5591
Cards
Entrez_Gene (NCBI)IGHV3-30  28439  immunoglobulin heavy variable 3-30
AliasesIGHV330; VH
GeneCards (Weizmann)IGHV3-30
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr14_KI270846v1_alt:331985-851764 [Contig_View]  IGHV3-30 [Vega]
TCGA cBioPortalIGHV3-30
AceView (NCBI)IGHV3-30
Genatlas (Paris)IGHV3-30
WikiGenes28439
SOURCE (Princeton)IGHV3-30
Genetics Home Reference (NIH)IGHV3-30
Genomic and cartography
GoldenPath hg38 (UCSC)IGHV3-30  -     chr14_KI270846v1_alt:331985-851764 -  14_KI270846v1_alt   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)IGHV3-30  -     14_KI270846v1_alt   [Description]    (hg19-Feb_2009)
EnsemblIGHV3-30 - 14_KI270846v1_alt [CytoView hg19]  IGHV3-30 - 14_KI270846v1_alt [CytoView hg38]
Mapping of homologs : NCBIIGHV3-30 [Mapview hg19]  IGHV3-30 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF035024
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000014 NC_018925 NG_001019 NT_187600
Consensus coding sequences : CCDS (NCBI)IGHV3-30
Cluster EST : UnigeneHs.720416 [ NCBI ]
CGAP (NCI)Hs.720416
Gene ExpressionIGHV3-30 [ NCBI-GEO ]   IGHV3-30 [ EBI - ARRAY_EXPRESS ]   IGHV3-30 [ SEEK ]   IGHV3-30 [ MEM ]
Gene Expression Viewer (FireBrowse)IGHV3-30 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)28439
GTEX Portal (Tissue expression)IGHV3-30
Protein : pattern, domain, 3D structure
UniProt/SwissProtP01768   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP01768  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP01768
Splice isoforms : SwissVarP01768
PhosPhoSitePlusP01768
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_fold    Ig_V-set   
Domain families : Pfam (Sanger)V-set (PF07686)   
Domain families : Pfam (NCBI)pfam07686   
Domain families : Smart (EMBL)IGv (SM00406)  
Conserved Domain (NCBI)IGHV3-30
DMDM Disease mutations28439
Blocks (Seattle)IGHV3-30
SuperfamilyP01768
Peptide AtlasP01768
IPIIPI00736507   IPI00748665   IPI00888954   
Protein Interaction databases
DIP (DOE-UCLA)P01768
IntAct (EBI)P01768
BioGRIDIGHV3-30
STRING (EMBL)IGHV3-30
ZODIACIGHV3-30
Ontologies - Pathways
QuickGOP01768
Ontology : AmiGOantigen binding  serine-type endopeptidase activity  extracellular region  extracellular region  extracellular space  plasma membrane  proteolysis  receptor-mediated endocytosis  immune response  complement activation  complement activation, classical pathway  Fc-epsilon receptor signaling pathway  Fc-gamma receptor signaling pathway involved in phagocytosis  regulation of immune response  leukocyte migration  
Ontology : EGO-EBIantigen binding  serine-type endopeptidase activity  extracellular region  extracellular region  extracellular space  plasma membrane  proteolysis  receptor-mediated endocytosis  immune response  complement activation  complement activation, classical pathway  Fc-epsilon receptor signaling pathway  Fc-gamma receptor signaling pathway involved in phagocytosis  regulation of immune response  leukocyte migration  
NDEx NetworkIGHV3-30
Atlas of Cancer Signalling NetworkIGHV3-30
Wikipedia pathwaysIGHV3-30
Orthology - Evolution
OrthoDB28439
Phylogenetic Trees/Animal Genes : TreeFamIGHV3-30
HOVERGENP01768
HOGENOMP01768
Homologs : HomoloGeneIGHV3-30
Homology/Alignments : Family Browser (UCSC)IGHV3-30
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIGHV3-30 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IGHV3-30
dbVarIGHV3-30
ClinVarIGHV3-30
1000_GenomesIGHV3-30 
Exome Variant ServerIGHV3-30
ExAC (Exome Aggregation Consortium)IGHV3-30 (select the gene name)
Genetic variants : HAPMAP28439
Genomic Variants (DGV)IGHV3-30 [DGVbeta]
DECIPHERIGHV3-30 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisIGHV3-30 
Mutations
ICGC Data PortalIGHV3-30 
TCGA Data PortalIGHV3-30 
Broad Tumor PortalIGHV3-30
OASIS PortalIGHV3-30 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDIGHV3-30
BioMutasearch IGHV3-30
DgiDB (Drug Gene Interaction Database)IGHV3-30
DoCM (Curated mutations)IGHV3-30 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IGHV3-30 (select a term)
intoGenIGHV3-30
Cancer3DIGHV3-30(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenIGHV3-30
Genetic Testing Registry IGHV3-30
NextProtP01768 [Medical]
TSGene28439
GENETestsIGHV3-30
Target ValidationIGHV3-30
Huge Navigator IGHV3-30 [HugePedia]
snp3D : Map Gene to Disease28439
BioCentury BCIQIGHV3-30
ClinGenIGHV3-30
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD28439
Chemical/Pharm GKB GenePA35191
Clinical trialIGHV3-30
Miscellaneous
canSAR (ICR)IGHV3-30 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineIGHV3-30
EVEXIGHV3-30
GoPubMedIGHV3-30
iHOPIGHV3-30
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:11:03 CEST 2017

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