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IGHV3-7 (immunoglobulin heavy variable 3-7)

Identity

Other aliasIGHV37
VH
HGNC (Hugo) IGHV3-7
LocusID (NCBI) 28452
Atlas_Id 53301
Location 14q32.33  [Link to chromosome band 14q32]
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)IGHV3-7   5620
Cards
Entrez_Gene (NCBI)IGHV3-7  28452  immunoglobulin heavy variable 3-7
AliasesIGHV37; VH
GeneCards (Weizmann)IGHV3-7
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  - [Contig_View]  IGHV3-7 [Vega]
TCGA cBioPortalIGHV3-7
AceView (NCBI)IGHV3-7
Genatlas (Paris)IGHV3-7
WikiGenes28452
SOURCE (Princeton)IGHV3-7
Genetics Home Reference (NIH)IGHV3-7
Genomic and cartography
GoldenPath hg38 (UCSC)IGHV3-7  -  
GoldenPath hg19 (UCSC)IGHV3-7  -  
EnsemblIGHV3-7 - [CytoView hg19]  IGHV3-7 - [CytoView hg38]
Mapping of homologs : NCBIIGHV3-7 [Mapview hg19]  IGHV3-7 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000014 NC_018925 NG_001019 NT_187600
Consensus coding sequences : CCDS (NCBI)IGHV3-7
Gene ExpressionIGHV3-7 [ NCBI-GEO ]   IGHV3-7 [ EBI - ARRAY_EXPRESS ]   IGHV3-7 [ SEEK ]   IGHV3-7 [ MEM ]
Gene Expression Viewer (FireBrowse)IGHV3-7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)28452
GTEX Portal (Tissue expression)IGHV3-7
Protein : pattern, domain, 3D structure
UniProt/SwissProtP01780   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP01780  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP01780
Splice isoforms : SwissVarP01780
PhosPhoSitePlusP01780
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_fold    Ig_V-set   
Domain families : Pfam (Sanger)V-set (PF07686)   
Domain families : Pfam (NCBI)pfam07686   
Domain families : Smart (EMBL)IGv (SM00406)  
Conserved Domain (NCBI)IGHV3-7
DMDM Disease mutations28452
Blocks (Seattle)IGHV3-7
PDB (SRS)2FL5   
PDB (PDBSum)2FL5   
PDB (IMB)2FL5   
PDB (RSDB)2FL5   
Structural Biology KnowledgeBase2FL5   
SCOP (Structural Classification of Proteins)2FL5   
CATH (Classification of proteins structures)2FL5   
SuperfamilyP01780
Peptide AtlasP01780
Protein Interaction databases
DIP (DOE-UCLA)P01780
IntAct (EBI)P01780
BioGRIDIGHV3-7
STRING (EMBL)IGHV3-7
ZODIACIGHV3-7
Ontologies - Pathways
QuickGOP01780
Ontology : AmiGOantigen binding  serine-type endopeptidase activity  extracellular region  extracellular region  plasma membrane  proteolysis  receptor-mediated endocytosis  immune response  complement activation  complement activation, classical pathway  Fc-epsilon receptor signaling pathway  Fc-gamma receptor signaling pathway involved in phagocytosis  regulation of immune response  leukocyte migration  extracellular exosome  blood microparticle  
Ontology : EGO-EBIantigen binding  serine-type endopeptidase activity  extracellular region  extracellular region  plasma membrane  proteolysis  receptor-mediated endocytosis  immune response  complement activation  complement activation, classical pathway  Fc-epsilon receptor signaling pathway  Fc-gamma receptor signaling pathway involved in phagocytosis  regulation of immune response  leukocyte migration  extracellular exosome  blood microparticle  
NDEx NetworkIGHV3-7
Atlas of Cancer Signalling NetworkIGHV3-7
Wikipedia pathwaysIGHV3-7
Orthology - Evolution
OrthoDB28452
Phylogenetic Trees/Animal Genes : TreeFamIGHV3-7
HOVERGENP01780
HOGENOMP01780
Homologs : HomoloGeneIGHV3-7
Homology/Alignments : Family Browser (UCSC)IGHV3-7
Gene fusions - Rearrangements
Tumor Fusion PortalIGHV3-7
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIGHV3-7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IGHV3-7
dbVarIGHV3-7
ClinVarIGHV3-7
1000_GenomesIGHV3-7 
Exome Variant ServerIGHV3-7
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP28452
Genomic Variants (DGV)IGHV3-7 [DGVbeta]
DECIPHERIGHV3-7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisIGHV3-7 
Mutations
ICGC Data PortalIGHV3-7 
TCGA Data PortalIGHV3-7 
Broad Tumor PortalIGHV3-7
OASIS PortalIGHV3-7 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDIGHV3-7
BioMutasearch IGHV3-7
DgiDB (Drug Gene Interaction Database)IGHV3-7
DoCM (Curated mutations)IGHV3-7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IGHV3-7 (select a term)
intoGenIGHV3-7
Cancer3DIGHV3-7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETIGHV3-7
MedgenIGHV3-7
Genetic Testing Registry IGHV3-7
NextProtP01780 [Medical]
TSGene28452
GENETestsIGHV3-7
Target ValidationIGHV3-7
Huge Navigator IGHV3-7 [HugePedia]
snp3D : Map Gene to Disease28452
BioCentury BCIQIGHV3-7
ClinGenIGHV3-7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD28452
Chemical/Pharm GKB GenePA35219
Clinical trialIGHV3-7
Miscellaneous
canSAR (ICR)IGHV3-7 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineIGHV3-7
EVEXIGHV3-7
GoPubMedIGHV3-7
iHOPIGHV3-7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:17:30 CET 2017

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