Atlas of Genetics and Cytogenetics in Oncology and Haematology


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IGHV3-7 (immunoglobulin heavy variable 3-7)

Identity

Other aliasIGHV37
VH
HGNC (Hugo) IGHV3-7
LocusID (NCBI) 28452
Atlas_Id 53301
Location 14q32.33  [Link to chromosome band 14q32]
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)IGHV3-7   5620
Cards
Entrez_Gene (NCBI)IGHV3-7  28452  immunoglobulin heavy variable 3-7
AliasesIGHV37; VH
GeneCards (Weizmann)IGHV3-7
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  - [Contig_View]  IGHV3-7 [Vega]
TCGA cBioPortalIGHV3-7
AceView (NCBI)IGHV3-7
Genatlas (Paris)IGHV3-7
WikiGenes28452
SOURCE (Princeton)IGHV3-7
Genetics Home Reference (NIH)IGHV3-7
Genomic and cartography
GoldenPath hg38 (UCSC)IGHV3-7  -  
GoldenPath hg19 (UCSC)IGHV3-7  -  
EnsemblIGHV3-7 - [CytoView hg19]  IGHV3-7 - [CytoView hg38]
Mapping of homologs : NCBIIGHV3-7 [Mapview hg19]  IGHV3-7 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000014 NG_001019 NT_187600
Consensus coding sequences : CCDS (NCBI)IGHV3-7
Gene ExpressionIGHV3-7 [ NCBI-GEO ]   IGHV3-7 [ EBI - ARRAY_EXPRESS ]   IGHV3-7 [ SEEK ]   IGHV3-7 [ MEM ]
Gene Expression Viewer (FireBrowse)IGHV3-7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)28452
GTEX Portal (Tissue expression)IGHV3-7
Protein : pattern, domain, 3D structure
UniProt/SwissProtP01780   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP01780  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP01780
Splice isoforms : SwissVarP01780
PhosPhoSitePlusP01780
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_dom_sf    Ig-like_fold    Ig_V-set   
Domain families : Pfam (Sanger)V-set (PF07686)   
Domain families : Pfam (NCBI)pfam07686   
Domain families : Smart (EMBL)IGv (SM00406)  
Conserved Domain (NCBI)IGHV3-7
DMDM Disease mutations28452
Blocks (Seattle)IGHV3-7
PDB (SRS)2FL5   
PDB (PDBSum)2FL5   
PDB (IMB)2FL5   
PDB (RSDB)2FL5   
Structural Biology KnowledgeBase2FL5   
SCOP (Structural Classification of Proteins)2FL5   
CATH (Classification of proteins structures)2FL5   
SuperfamilyP01780
Peptide AtlasP01780
Protein Interaction databases
DIP (DOE-UCLA)P01780
IntAct (EBI)P01780
BioGRIDIGHV3-7
STRING (EMBL)IGHV3-7
ZODIACIGHV3-7
Ontologies - Pathways
QuickGOP01780
Ontology : AmiGOantigen binding  antigen binding  serine-type endopeptidase activity  extracellular region  extracellular region  plasma membrane  proteolysis  receptor-mediated endocytosis  phagocytosis, recognition  phagocytosis, engulfment  immune response  complement activation  complement activation, classical pathway  complement activation, classical pathway  external side of plasma membrane  regulation of complement activation  immunoglobulin receptor binding  Fc-epsilon receptor signaling pathway  Fc-gamma receptor signaling pathway involved in phagocytosis  immunoglobulin complex, circulating  defense response to bacterium  innate immune response  regulation of immune response  B cell receptor signaling pathway  positive regulation of B cell activation  leukocyte migration  extracellular exosome  blood microparticle  
Ontology : EGO-EBIantigen binding  antigen binding  serine-type endopeptidase activity  extracellular region  extracellular region  plasma membrane  proteolysis  receptor-mediated endocytosis  phagocytosis, recognition  phagocytosis, engulfment  immune response  complement activation  complement activation, classical pathway  complement activation, classical pathway  external side of plasma membrane  regulation of complement activation  immunoglobulin receptor binding  Fc-epsilon receptor signaling pathway  Fc-gamma receptor signaling pathway involved in phagocytosis  immunoglobulin complex, circulating  defense response to bacterium  innate immune response  regulation of immune response  B cell receptor signaling pathway  positive regulation of B cell activation  leukocyte migration  extracellular exosome  blood microparticle  
NDEx NetworkIGHV3-7
Atlas of Cancer Signalling NetworkIGHV3-7
Wikipedia pathwaysIGHV3-7
Orthology - Evolution
OrthoDB28452
Phylogenetic Trees/Animal Genes : TreeFamIGHV3-7
HOVERGENP01780
HOGENOMP01780
Homologs : HomoloGeneIGHV3-7
Homology/Alignments : Family Browser (UCSC)IGHV3-7
Gene fusions - Rearrangements
Fusion : QuiverIGHV3-7
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIGHV3-7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IGHV3-7
dbVarIGHV3-7
ClinVarIGHV3-7
1000_GenomesIGHV3-7 
Exome Variant ServerIGHV3-7
Varsome BrowserIGHV3-7
Genetic variants : HAPMAP28452
Genomic Variants (DGV)IGHV3-7 [DGVbeta]
DECIPHERIGHV3-7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisIGHV3-7 
Mutations
ICGC Data PortalIGHV3-7 
TCGA Data PortalIGHV3-7 
Broad Tumor PortalIGHV3-7
OASIS PortalIGHV3-7 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDIGHV3-7
BioMutasearch IGHV3-7
DgiDB (Drug Gene Interaction Database)IGHV3-7
DoCM (Curated mutations)IGHV3-7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IGHV3-7 (select a term)
intoGenIGHV3-7
Cancer3DIGHV3-7(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETIGHV3-7
MedgenIGHV3-7
Genetic Testing Registry IGHV3-7
NextProtP01780 [Medical]
TSGene28452
GENETestsIGHV3-7
Target ValidationIGHV3-7
Huge Navigator IGHV3-7 [HugePedia]
snp3D : Map Gene to Disease28452
BioCentury BCIQIGHV3-7
ClinGenIGHV3-7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD28452
Chemical/Pharm GKB GenePA35219
Clinical trialIGHV3-7
Miscellaneous
canSAR (ICR)IGHV3-7 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineIGHV3-7
EVEXIGHV3-7
GoPubMedIGHV3-7
iHOPIGHV3-7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Aug 16 11:07:53 CEST 2018

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