Atlas of Genetics and Cytogenetics in Oncology and Haematology


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IGHV3OR16-7 (immunoglobulin heavy variable 3/OR16-7 (pseudogene))

Identity

Other aliasIGH
IGHV
IGHV3/OR16-7
IGHV3OR167
HGNC (Hugo) IGHV3OR16-7
LocusID (NCBI) 28309
Atlas_Id 78626
Location 14_KI270846v1_alt  [Link to chromosome band 14]
Location_base_pair Starts at 330968 and ends at 621419 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)IGHV3OR16-7   5642
Cards
Entrez_Gene (NCBI)IGHV3OR16-7  28309  immunoglobulin heavy variable 3/OR16-7 (pseudogene)
AliasesIGH; IGHV; IGHV3/OR16-7; IGHV3OR167
GeneCards (Weizmann)IGHV3OR16-7
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr14_KI270846v1_alt:330968-621419 [Contig_View]  IGHV3OR16-7 [Vega]
TCGA cBioPortalIGHV3OR16-7
AceView (NCBI)IGHV3OR16-7
Genatlas (Paris)IGHV3OR16-7
WikiGenes28309
SOURCE (Princeton)IGHV3OR16-7
Genetics Home Reference (NIH)IGHV3OR16-7
Genomic and cartography
GoldenPath hg38 (UCSC)IGHV3OR16-7  -     chr14_KI270846v1_alt:330968-621419 -  14_KI270846v1_alt   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)IGHV3OR16-7  -     14_KI270846v1_alt   [Description]    (hg19-Feb_2009)
EnsemblIGHV3OR16-7 - 14_KI270846v1_alt [CytoView hg19]  IGHV3OR16-7 - 14_KI270846v1_alt [CytoView hg38]
Mapping of homologs : NCBIIGHV3OR16-7 [Mapview hg19]  IGHV3OR16-7 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF028108 AF209733 AY003842 DQ454529 EU099108
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)IGHV3OR16-7
Cluster EST : UnigeneHs.649847 [ NCBI ]
CGAP (NCI)Hs.649847
Gene ExpressionIGHV3OR16-7 [ NCBI-GEO ]   IGHV3OR16-7 [ EBI - ARRAY_EXPRESS ]   IGHV3OR16-7 [ SEEK ]   IGHV3OR16-7 [ MEM ]
Gene Expression Viewer (FireBrowse)IGHV3OR16-7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)28309
GTEX Portal (Tissue expression)IGHV3OR16-7
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)IGHV3OR16-7
DMDM Disease mutations28309
Blocks (Seattle)IGHV3OR16-7
Protein Interaction databases
BioGRIDIGHV3OR16-7
STRING (EMBL)IGHV3OR16-7
ZODIACIGHV3OR16-7
Ontologies - Pathways
Huge Navigator IGHV3OR16-7 [HugePedia]
snp3D : Map Gene to Disease28309
BioCentury BCIQIGHV3OR16-7
ClinGenIGHV3OR16-7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD28309
Chemical/Pharm GKB GenePA35239
Clinical trialIGHV3OR16-7
Miscellaneous
canSAR (ICR)IGHV3OR16-7 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineIGHV3OR16-7
EVEXIGHV3OR16-7
GoPubMedIGHV3OR16-7
iHOPIGHV3OR16-7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 11:51:22 CET 2017

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