Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

IGHV4-31 (immunoglobulin heavy variable 4-31)

Identity

Other aliasIGHV431
HGNC (Hugo) IGHV4-31
LocusID (NCBI) 28396
Atlas_Id 53217
Location 14q32.33  [Link to chromosome band 14q32]
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)IGHV4-31   5649
Cards
Entrez_Gene (NCBI)IGHV4-31  28396  immunoglobulin heavy variable 4-31
AliasesIGHV431
GeneCards (Weizmann)IGHV4-31
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  - [Contig_View]  IGHV4-31 [Vega]
TCGA cBioPortalIGHV4-31
AceView (NCBI)IGHV4-31
Genatlas (Paris)IGHV4-31
WikiGenes28396
SOURCE (Princeton)IGHV4-31
Genetics Home Reference (NIH)IGHV4-31
Genomic and cartography
GoldenPath hg38 (UCSC)IGHV4-31  -  
GoldenPath hg19 (UCSC)IGHV4-31  -  
EnsemblIGHV4-31 - [CytoView hg19]  IGHV4-31 - [CytoView hg38]
Mapping of homologs : NCBIIGHV4-31 [Mapview hg19]  IGHV4-31 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK129777 AK129812 AK130589 AK130844 AK301327
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)IGHV4-31
Cluster EST : UnigeneHs.510635 [ NCBI ]
CGAP (NCI)Hs.510635
Gene ExpressionIGHV4-31 [ NCBI-GEO ]   IGHV4-31 [ EBI - ARRAY_EXPRESS ]   IGHV4-31 [ SEEK ]   IGHV4-31 [ MEM ]
Gene Expression Viewer (FireBrowse)IGHV4-31 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)28396
GTEX Portal (Tissue expression)IGHV4-31
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0DP07   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0DP07  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0DP07
Splice isoforms : SwissVarP0DP07
PhosPhoSitePlusP0DP07
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_dom_sf    Ig-like_fold    Ig_V-set   
Domain families : Pfam (Sanger)V-set (PF07686)   
Domain families : Pfam (NCBI)pfam07686   
Domain families : Smart (EMBL)IGv (SM00406)  
Conserved Domain (NCBI)IGHV4-31
DMDM Disease mutations28396
Blocks (Seattle)IGHV4-31
SuperfamilyP0DP07
Peptide AtlasP0DP07
IPIIPI00876888   IPI00784817   IPI00784842   IPI00930124   IPI00645363   IPI00423463   IPI00423464   IPI00816314   IPI00423466   IPI00442909   IPI00442911   IPI00384938   IPI00448925   IPI00892671   
Protein Interaction databases
DIP (DOE-UCLA)P0DP07
IntAct (EBI)P0DP07
BioGRIDIGHV4-31
STRING (EMBL)IGHV4-31
ZODIACIGHV4-31
Ontologies - Pathways
QuickGOP0DP07
Ontology : AmiGOadaptive immune response  antigen binding  antigen binding  extracellular region  plasma membrane  phagocytosis, recognition  phagocytosis, engulfment  complement activation, classical pathway  external side of plasma membrane  immunoglobulin receptor binding  immunoglobulin complex, circulating  defense response to bacterium  innate immune response  B cell receptor signaling pathway  positive regulation of B cell activation  
Ontology : EGO-EBIadaptive immune response  antigen binding  antigen binding  extracellular region  plasma membrane  phagocytosis, recognition  phagocytosis, engulfment  complement activation, classical pathway  external side of plasma membrane  immunoglobulin receptor binding  immunoglobulin complex, circulating  defense response to bacterium  innate immune response  B cell receptor signaling pathway  positive regulation of B cell activation  
NDEx NetworkIGHV4-31
Atlas of Cancer Signalling NetworkIGHV4-31
Wikipedia pathwaysIGHV4-31
Orthology - Evolution
OrthoDB28396
Phylogenetic Trees/Animal Genes : TreeFamIGHV4-31
HOVERGENP0DP07
HOGENOMP0DP07
Homologs : HomoloGeneIGHV4-31
Homology/Alignments : Family Browser (UCSC)IGHV4-31
Gene fusions - Rearrangements
Fusion : QuiverIGHV4-31
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIGHV4-31 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IGHV4-31
dbVarIGHV4-31
ClinVarIGHV4-31
1000_GenomesIGHV4-31 
Exome Variant ServerIGHV4-31
Varsome BrowserIGHV4-31
Genetic variants : HAPMAP28396
Genomic Variants (DGV)IGHV4-31 [DGVbeta]
DECIPHERIGHV4-31 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisIGHV4-31 
Mutations
ICGC Data PortalIGHV4-31 
TCGA Data PortalIGHV4-31 
Broad Tumor PortalIGHV4-31
OASIS PortalIGHV4-31 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDIGHV4-31
BioMutasearch IGHV4-31
DgiDB (Drug Gene Interaction Database)IGHV4-31
DoCM (Curated mutations)IGHV4-31 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IGHV4-31 (select a term)
intoGenIGHV4-31
Cancer3DIGHV4-31(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETIGHV4-31
MedgenIGHV4-31
Genetic Testing Registry IGHV4-31
NextProtP0DP07 [Medical]
TSGene28396
GENETestsIGHV4-31
Target ValidationIGHV4-31
Huge Navigator IGHV4-31 [HugePedia]
snp3D : Map Gene to Disease28396
BioCentury BCIQIGHV4-31
ClinGenIGHV4-31
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD28396
Chemical/Pharm GKB GenePA35246
Clinical trialIGHV4-31
Miscellaneous
canSAR (ICR)IGHV4-31 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineIGHV4-31
EVEXIGHV4-31
GoPubMedIGHV4-31
iHOPIGHV4-31
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Aug 27 11:28:47 CEST 2018

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.