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IGIP (IgA-inducing protein)

Identity

Alias_namesC5orf53
chromosome 5 open reading frame 53
IgA-inducing protein homolog (Bos taurus)
Alias_symbol (synonym)LOC492311
Other alias
HGNC (Hugo) IGIP
LocusID (NCBI) 492311
Atlas_Id 64557
Location 5q31.3  [Link to chromosome band 5q31]
Location_base_pair Starts at 139505521 and ends at 139508391 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)IGIP   33847
Cards
Entrez_Gene (NCBI)IGIP  492311  IgA-inducing protein
AliasesC5orf53
GeneCards (Weizmann)IGIP
Ensembl hg19 (Hinxton)ENSG00000182700 [Gene_View]  chr5:139505521-139508391 [Contig_View]  IGIP [Vega]
Ensembl hg38 (Hinxton)ENSG00000182700 [Gene_View]  chr5:139505521-139508391 [Contig_View]  IGIP [Vega]
ICGC DataPortalENSG00000182700
TCGA cBioPortalIGIP
AceView (NCBI)IGIP
Genatlas (Paris)IGIP
WikiGenes492311
SOURCE (Princeton)IGIP
Genetics Home Reference (NIH)IGIP
Genomic and cartography
GoldenPath hg19 (UCSC)IGIP  -     chr5:139505521-139508391 +  5q31.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)IGIP  -     5q31.3   [Description]    (hg38-Dec_2013)
EnsemblIGIP - 5q31.3 [CytoView hg19]  IGIP - 5q31.3 [CytoView hg38]
Mapping of homologs : NCBIIGIP [Mapview hg19]  IGIP [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB073888 BC017422 BC041380 CD516511
RefSeq transcript (Entrez)NM_001007189
RefSeq genomic (Entrez)NC_000005 NC_018916 NT_029289 NW_004929324
Consensus coding sequences : CCDS (NCBI)IGIP
Cluster EST : UnigeneHs.696360 [ NCBI ]
CGAP (NCI)Hs.696360
Alternative Splicing GalleryENSG00000182700
Gene ExpressionIGIP [ NCBI-GEO ]   IGIP [ EBI - ARRAY_EXPRESS ]   IGIP [ SEEK ]   IGIP [ MEM ]
Gene Expression Viewer (FireBrowse)IGIP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)492311
GTEX Portal (Tissue expression)IGIP
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NJ69   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NJ69  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NJ69
Splice isoforms : SwissVarA6NJ69
PhosPhoSitePlusA6NJ69
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)IGIP
DMDM Disease mutations492311
Blocks (Seattle)IGIP
SuperfamilyA6NJ69
Human Protein AtlasENSG00000182700
Peptide AtlasA6NJ69
HPRD17411
IPIIPI00103331   
Protein Interaction databases
DIP (DOE-UCLA)A6NJ69
IntAct (EBI)A6NJ69
FunCoupENSG00000182700
BioGRIDIGIP
STRING (EMBL)IGIP
ZODIACIGIP
Ontologies - Pathways
QuickGOA6NJ69
Ontology : AmiGOextracellular region  
Ontology : EGO-EBIextracellular region  
NDEx NetworkIGIP
Atlas of Cancer Signalling NetworkIGIP
Wikipedia pathwaysIGIP
Orthology - Evolution
OrthoDB492311
GeneTree (enSembl)ENSG00000182700
Phylogenetic Trees/Animal Genes : TreeFamIGIP
HOVERGENA6NJ69
HOGENOMA6NJ69
Homologs : HomoloGeneIGIP
Homology/Alignments : Family Browser (UCSC)IGIP
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIGIP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IGIP
dbVarIGIP
ClinVarIGIP
1000_GenomesIGIP 
Exome Variant ServerIGIP
ExAC (Exome Aggregation Consortium)IGIP (select the gene name)
Genetic variants : HAPMAP492311
Genomic Variants (DGV)IGIP [DGVbeta]
DECIPHER (Syndromes)5:139505521-139508391  ENSG00000182700
CONAN: Copy Number AnalysisIGIP 
Mutations
ICGC Data PortalIGIP 
TCGA Data PortalIGIP 
Broad Tumor PortalIGIP
OASIS PortalIGIP [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDIGIP
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch IGIP
DgiDB (Drug Gene Interaction Database)IGIP
DoCM (Curated mutations)IGIP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IGIP (select a term)
intoGenIGIP
Cancer3DIGIP(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenIGIP
Genetic Testing Registry IGIP
NextProtA6NJ69 [Medical]
TSGene492311
GENETestsIGIP
Huge Navigator IGIP [HugePedia]
snp3D : Map Gene to Disease492311
BioCentury BCIQIGIP
ClinGenIGIP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD492311
Chemical/Pharm GKB GenePA164717341
Clinical trialIGIP
Miscellaneous
canSAR (ICR)IGIP (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineIGIP
EVEXIGIP
GoPubMedIGIP
iHOPIGIP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:08:39 CET 2017

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