Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

IGKV1-5 (immunoglobulin kappa variable 1-5)

Identity

Other aliasIGKV
IGKV15
L12
L12a
V1
HGNC (Hugo) IGKV1-5
LocusID (NCBI) 28299
Atlas_Id 64559
Location 2p11.2  [Link to chromosome band 2p11]
Location_base_pair Starts at 88857168 and ends at 89222461 bp from pter ( according to hg38-Dec_2013)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)IGKV1-5   5741
Cards
Entrez_Gene (NCBI)IGKV1-5  28299  immunoglobulin kappa variable 1-5
AliasesIGKV; IGKV15; L12; L12a; 
V1
GeneCards (Weizmann)IGKV1-5
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr2:88857168-89222461 [Contig_View]  IGKV1-5 [Vega]
TCGA cBioPortalIGKV1-5
AceView (NCBI)IGKV1-5
Genatlas (Paris)IGKV1-5
WikiGenes28299
SOURCE (Princeton)IGKV1-5
Genetics Home Reference (NIH)IGKV1-5
Genomic and cartography
GoldenPath hg38 (UCSC)IGKV1-5  -     chr2:88857168-89222461 -  2p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)IGKV1-5  -     2p11.2   [Description]    (hg19-Feb_2009)
EnsemblIGKV1-5 - 2p11.2 [CytoView hg19]  IGKV1-5 - 2p11.2 [CytoView hg38]
Mapping of homologs : NCBIIGKV1-5 [Mapview hg19]  IGKV1-5 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC030814 BC034142 BC034146 BC073792
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)IGKV1-5
Cluster EST : UnigeneHs.449609 [ NCBI ]
CGAP (NCI)Hs.449609
Gene ExpressionIGKV1-5 [ NCBI-GEO ]   IGKV1-5 [ EBI - ARRAY_EXPRESS ]   IGKV1-5 [ SEEK ]   IGKV1-5 [ MEM ]
Gene Expression Viewer (FireBrowse)IGKV1-5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)28299
GTEX Portal (Tissue expression)IGKV1-5
Protein : pattern, domain, 3D structure
UniProt/SwissProtP01602   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP01602  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP01602
Splice isoforms : SwissVarP01602
PhosPhoSitePlusP01602
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_fold    Ig_sub    Ig_V-set   
Domain families : Pfam (Sanger)V-set (PF07686)   
Domain families : Pfam (NCBI)pfam07686   
Domain families : Smart (EMBL)IG (SM00409)  IGv (SM00406)  
Conserved Domain (NCBI)IGKV1-5
DMDM Disease mutations28299
Blocks (Seattle)IGKV1-5
SuperfamilyP01602
Peptide AtlasP01602
IPIIPI00829912   IPI00829947   
Protein Interaction databases
DIP (DOE-UCLA)P01602
IntAct (EBI)P01602
BioGRIDIGKV1-5
STRING (EMBL)IGKV1-5
ZODIACIGKV1-5
Ontologies - Pathways
QuickGOP01602
Ontology : AmiGOimmunoglobulin production  antigen binding  serine-type endopeptidase activity  extracellular region  extracellular region  plasma membrane  proteolysis  receptor-mediated endocytosis  immune response  immune response  complement activation  complement activation, classical pathway  Fc-epsilon receptor signaling pathway  Fc-gamma receptor signaling pathway involved in phagocytosis  regulation of immune response  leukocyte migration  extracellular exosome  blood microparticle  
Ontology : EGO-EBIimmunoglobulin production  antigen binding  serine-type endopeptidase activity  extracellular region  extracellular region  plasma membrane  proteolysis  receptor-mediated endocytosis  immune response  immune response  complement activation  complement activation, classical pathway  Fc-epsilon receptor signaling pathway  Fc-gamma receptor signaling pathway involved in phagocytosis  regulation of immune response  leukocyte migration  extracellular exosome  blood microparticle  
NDEx NetworkIGKV1-5
Atlas of Cancer Signalling NetworkIGKV1-5
Wikipedia pathwaysIGKV1-5
Orthology - Evolution
OrthoDB28299
Phylogenetic Trees/Animal Genes : TreeFamIGKV1-5
HOVERGENP01602
HOGENOMP01602
Homologs : HomoloGeneIGKV1-5
Homology/Alignments : Family Browser (UCSC)IGKV1-5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIGKV1-5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IGKV1-5
dbVarIGKV1-5
ClinVarIGKV1-5
1000_GenomesIGKV1-5 
Exome Variant ServerIGKV1-5
ExAC (Exome Aggregation Consortium)IGKV1-5 (select the gene name)
Genetic variants : HAPMAP28299
Genomic Variants (DGV)IGKV1-5 [DGVbeta]
DECIPHERIGKV1-5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisIGKV1-5 
Mutations
ICGC Data PortalIGKV1-5 
TCGA Data PortalIGKV1-5 
Broad Tumor PortalIGKV1-5
OASIS PortalIGKV1-5 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDIGKV1-5
BioMutasearch IGKV1-5
DgiDB (Drug Gene Interaction Database)IGKV1-5
DoCM (Curated mutations)IGKV1-5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IGKV1-5 (select a term)
intoGenIGKV1-5
Cancer3DIGKV1-5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenIGKV1-5
Genetic Testing Registry IGKV1-5
NextProtP01602 [Medical]
TSGene28299
GENETestsIGKV1-5
Target ValidationIGKV1-5
Huge Navigator IGKV1-5 [HugePedia]
snp3D : Map Gene to Disease28299
BioCentury BCIQIGKV1-5
ClinGenIGKV1-5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD28299
Chemical/Pharm GKB GenePA35324
Clinical trialIGKV1-5
Miscellaneous
canSAR (ICR)IGKV1-5 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineIGKV1-5
EVEXIGKV1-5
GoPubMedIGKV1-5
iHOPIGKV1-5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:11:05 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.